View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_17 (Length: 361)
Name: NF1583_low_17
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 30359591 - 30359264
Alignment:
| Q |
18 |
atgagttgggttgggttggctcagtttcggtcaagaatcattagttcagattagctcaaaaaagtgtacttttttgt-gaaacgcaatcaacccaatgaa |
116 |
Q |
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| T |
30359591 |
atgagttgggttgggttggctcagtttcggtcaagaatcattagttcagattggctcaaaaaattgtactttttttttgatacgcaatcaacccaatgaa |
30359492 |
T |
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| Q |
117 |
agtaatgaacaagttggtttgattcggaccatgtcatgacacacatatatataatttaaaattaaaaaacaatgacactctatttaatagaaattcatac |
216 |
Q |
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| T |
30359491 |
agtaatgaacaaattggtttgattcggatcatgtcatgacacacatatatataatttaaaattaaaaaacaatgacactctatttaatagaa-ttcatac |
30359393 |
T |
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| Q |
217 |
atttgaactaaattacataatttaaaatcacttttaactaaattgaaacacttgtagatattcacatgtgtttttcaacggattgagtttgtaggtttga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||| |
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| T |
30359392 |
atttgaactaaattacataatttaaaatcacttttaactaaattgaaacactagtagatattctcatgtgtttttcaaatgattaagtttgtaggtttga |
30359293 |
T |
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| Q |
317 |
aatcataagttgttatccaaaccaaatca |
345 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
30359292 |
aatcataagttgttatccgaaccaaatca |
30359264 |
T |
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