View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1583_low_2 (Length: 506)
Name: NF1583_low_2
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_2 |
 | |
|
| [»] scaffold0331 (1 HSPs) |
| | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0331 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 866 - 1140
Alignment:
| Q |
20 |
tgaatcatggcaaatgggttaagttatgagaaagaagggttctgtgcaaatgagttttgttaatatgcttattttgttttgttaattgaatcatggcaaa |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
866 |
tgaatcatggcaaatgggtttagttatgagaaagaggggttctatgcaaatgggttctgttaatatgcttattttgttttggtaattgaatcatggcaaa |
965 |
T |
|
| Q |
120 |
tgggttccgccgttgggtttctcacttcttagttctgttaattgatcatggcatgtgtgtcaatcagcaagctacaacctgaatcatttgccttttaatt |
219 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||| | ||| |
|
|
| T |
966 |
taggttccgttgttgggtttctcacttcttagttctgttaattgatcatggcatgtttgtcagtctgcaagctacaacctgaatcatctgccttctgatt |
1065 |
T |
|
| Q |
220 |
ttgttaattgagctttgaactctattaattcatcactagtttggattttatagatcatttagcacacattaacta |
294 |
Q |
| |
|
||||||||||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
1066 |
ttgttaattgatctttcaactctagtaagtcatcactagtttggattctatagatcatttatcacagattaacta |
1140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 7205770 - 7205533
Alignment:
| Q |
20 |
tgaatcatggcaaatgggttaagttatgagaaagaagggttctgtgcaaatgagttttgttaatatgcttattttgttttgttaattgaatcatggcaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7205770 |
tgaatcatggcaaatgggttaagttatgagaaagaagggttatgtgcaaatgggttctgttaatatgcttattttgttctgttaattgaatcatggcaaa |
7205671 |
T |
|
| Q |
120 |
tgggttccgccgttgggtttctcacttcttagttctgttaattgatcatggcatgtgtgtcaatcagcaagctacaacctgaatcatttgccttttaatt |
219 |
Q |
| |
|
| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| | ||||||||||||||||||| |
|
|
| T |
7205670 |
taggttctgtcattgggtttctcacttcttagttctgttaattgatcatggcatgtgtgtcaatctgcaagttgcaactttaatcatttgccttttaatt |
7205571 |
T |
|
| Q |
220 |
ttgttaattgagctttgaactctattaattcatcacta |
257 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7205570 |
ttgttaattgatctttgaactctattaattcatcacta |
7205533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 48009776 - 48009876
Alignment:
| Q |
20 |
tgaatcatggcaaatgggttaagttatgagaaagaagggttctgtgcaaatgagttttgttaatatgcttattttgttttgttaattgaatcatggcaaa |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
48009776 |
tgaatcatggcaaatgggctaagttatgagaaataagggttctgtgcaaacgagttctgttaatatgcttattttgttatgttaattgaatcatgacaaa |
48009875 |
T |
|
| Q |
120 |
t |
120 |
Q |
| |
|
| |
|
|
| T |
48009876 |
t |
48009876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 425 - 496
Target Start/End: Original strand, 53929203 - 53929274
Alignment:
| Q |
425 |
gtttaaagtggacccctaatttaattagttttatctccactaactgctatctatttttattcacaggttctg |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53929203 |
gtttaaagtggacccctaatttaattagtttgatctccactaactgctatctatttttatttacaggttctg |
53929274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 403
Target Start/End: Original strand, 53929011 - 53929115
Alignment:
| Q |
300 |
cacattgcactgttttcctcttgtctactgtttactaagcacaacctt-gtatctgagtgggtttttctccatctttgatctaattctaaatcttagcag |
398 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| |||| || ||| ||||||||||| ||| ||||| || || |||||||||||||||| |
|
|
| T |
53929011 |
cacattgcactgttttcctcttgtcgaaggtttactaagcacatccttggtgtctaagtgggtttttatccctctttcatttacttctaaatcttagcag |
53929110 |
T |
|
| Q |
399 |
tatag |
403 |
Q |
| |
|
||||| |
|
|
| T |
53929111 |
tatag |
53929115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 7403248 - 7403157
Alignment:
| Q |
203 |
tcatttgccttttaattttgttaattgagctttgaactctattaattcatcactagtttggattttatagatcatttagcacacattaacta |
294 |
Q |
| |
|
||||||||||| | |||||||||||||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
7403248 |
tcatttgccttctgattttgttaattgatctttcaactctagtaagtcatcactagtttggattctatagatcatttatcacagattaacta |
7403157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 22276 - 22234
Alignment:
| Q |
29 |
gcaaatgggttaagttatgagaaagaagggttctgtgcaaatg |
71 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
22276 |
gcaaatgggttaagttgtgagaaagaagggttctgtgaaaatg |
22234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 85442 - 85497
Alignment:
| Q |
232 |
ctttgaactctattaattcatcactagtttggattttatagatcatttagcacacat |
288 |
Q |
| |
|
||||||| ||||| ||||||||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
85442 |
ctttgaaatctatgaattcatcacttgtt-ggattttggagatcatttagcacacat |
85497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University