View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_26 (Length: 318)
Name: NF1583_low_26
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 51114938 - 51115223
Alignment:
| Q |
17 |
agttttaatatggtcaataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttg |
116 |
Q |
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| T |
51114938 |
agttttaatatggtcaataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttg |
51115037 |
T |
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| Q |
117 |
gaaattaggtggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttcta |
216 |
Q |
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| T |
51115038 |
gaaattaggtggttgttctctgtttcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagatttaggtgtacattttgttgtttcta |
51115137 |
T |
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| Q |
217 |
tttagtttttgatcaactttcgttgttgcttaatgattctgtttgtggtgacttgattattgaatacacaagtctctcatgtatgctat |
305 |
Q |
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| T |
51115138 |
tttagtttttgatcaactttcgttgttgcttaatgattctgtttgt-gtgacttgattattgaat--acaagtctctcatgtatgctat |
51115223 |
T |
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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 1119125 - 1119198
Alignment:
| Q |
126 |
tggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgt |
199 |
Q |
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| T |
1119125 |
tggttgttctctgtttcagtatttcagttacaatgtacggcttacaaaactacgactcaggaagattttggtgt |
1119198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 29020718 - 29020664
Alignment:
| Q |
162 |
atggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttcta |
216 |
Q |
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| T |
29020718 |
atggtttacagaactatgactcaggaagattttggtgtattttgtgttgtctcta |
29020664 |
T |
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