View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_29 (Length: 314)
Name: NF1583_low_29
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 156572 - 156353
Alignment:
| Q |
15 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
114 |
Q |
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| T |
156572 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
156473 |
T |
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| Q |
115 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
214 |
Q |
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| T |
156472 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggcacatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
156373 |
T |
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| Q |
215 |
gttgactccttagttgttgt |
234 |
Q |
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|||||||||||||||||||| |
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| T |
156372 |
gttgactccttagttgttgt |
156353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 156217 - 156165
Alignment:
| Q |
248 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctt |
300 |
Q |
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| T |
156217 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctt |
156165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 31976695 - 31976581
Alignment:
| Q |
120 |
ttggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttga |
219 |
Q |
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| T |
31976695 |
ttggaataggagatgtttatctggcagaattatgtggagtgttggaagggctcatgtatgtcagaaggttgtaatttcgatttattgagttacatgttga |
31976596 |
T |
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| Q |
220 |
ctccttagttgttgt |
234 |
Q |
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| T |
31976595 |
cttcttacttgttgt |
31976581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 37054140 - 37054066
Alignment:
| Q |
161 |
ttggaagggctcatgta-tgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgt |
234 |
Q |
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| T |
37054140 |
ttggaaggggtcatgtaatgttagaaggttgcaattttgatttattgagttgcatgttgactccttagttattgt |
37054066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 2909370 - 2909283
Alignment:
| Q |
139 |
tttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactcctta |
226 |
Q |
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| T |
2909370 |
tttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcctta |
2909283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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