View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_30 (Length: 314)
Name: NF1583_low_30
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 46522559 - 46522848
Alignment:
| Q |
13 |
aatataaacgtgtattttctttagttcaggtgtctagcacatgatagtgtaggacgtgtaaagtgtgtctatgttgatgttgtatatcagacatgttatt |
112 |
Q |
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| T |
46522559 |
aatataaacgtgtattttctttagtccaggtgtctagcacatgatagtgtaggacgtgtaaagtgtgtctatgttgatgttgtatatcagacatgttatt |
46522658 |
T |
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| Q |
113 |
tagctaataaattactttacttatcggnnnnnnntggtctcaatacaaagttctcataatatatgataatgtactgttaattttaaaaaagta-tagttt |
211 |
Q |
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| T |
46522659 |
tagctaataaattactttacttatcggaaaaaaatggtctcaatataaagttctcataatatatgataatgtactcttaattttaaaaaagtattagttt |
46522758 |
T |
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| Q |
212 |
taaataaatcatttatcgatatttgatttgtcaattgtttatcttttaaaataaacaaaaagcagcttataattataagtaaatgaatag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46522759 |
taaataaatcatttatcgatatttgatttgtcaattgtttatcttttaaaataaacaaaaagcagcttataattataagtaaatgaatag |
46522848 |
T |
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