View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_31 (Length: 312)
Name: NF1583_low_31
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 293
Target Start/End: Original strand, 11623559 - 11623847
Alignment:
| Q |
5 |
acttaatttagaaagcttaaagagtattttggaggcactcgttaaccaaaccctttcctttatcataagaaaataataaagtaagcagctcaagagtgaa |
104 |
Q |
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| T |
11623559 |
acttaatttaaaaagcttaaagagtgccccggagacactcgttaacaagaccccttcctttatcataagaaaataataaagtaaggagctcaagagtgaa |
11623658 |
T |
|
| Q |
105 |
gagaacaagcttatatttatatgtacatcaactcaaacagaacaagcttagcacataaaataaaaacacctatttatagtgttacacaaaaagagacaaa |
204 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11623659 |
gagaacaagcttatatttacatgtacatcaactcaaacagaacaagcttagcacataaaataaaaacacctatttatagtgttacacaaaaagagacaaa |
11623758 |
T |
|
| Q |
205 |
attagttcccctttcttgtgctgagactaccaaccaaatgcacattggtgagaaagatggtcactgtctcaagagaagaagtgactaac |
293 |
Q |
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| T |
11623759 |
attagttcccctttcttgtgctgagactaccaaccaaatgcacattggtgagaaagatggtcactgtctcaagagaagaagtgactaac |
11623847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 3027068 - 3027125
Alignment:
| Q |
2 |
attacttaatttagaaagcttaaagagtattttggaggcactcgttaaccaaaccctt |
59 |
Q |
| |
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| T |
3027068 |
attacttaatttagaatgcttaaagagtgctccggaggcactcgttaacaagaccctt |
3027125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1445216 - 1445244
Alignment:
| Q |
1 |
tattacttaatttagaaagcttaaagagt |
29 |
Q |
| |
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|
| T |
1445216 |
tattacttaatttagaaagcttaaagagt |
1445244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7231930 - 7231882
Alignment:
| Q |
1 |
tattacttaatttagaaagcttaaagagtattttggaggcactcgttaa |
49 |
Q |
| |
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|||||||||||||| || |||||||||||| || ||||| ||||||||| |
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|
| T |
7231930 |
tattacttaatttaaaaggcttaaagagtacttcggaggaactcgttaa |
7231882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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