View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_32 (Length: 310)
Name: NF1583_low_32
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 44071325 - 44071556
Alignment:
| Q |
1 |
ctcacttacatgtgctacaagtggtgatgagatgagtgtcacaacctttcattttctcaaacgaggaagacccacgtagccctactattttttcttcaca |
100 |
Q |
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| T |
44071325 |
ctcactaacatgtgccacaagtggtgatg------gtgtcacaacctttcattttctcaaacaaggaagacccacgtagccctactattttttcgtcaca |
44071418 |
T |
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| Q |
101 |
ttattatctcaaatttaaattgtcaacacctgtgaatttcttaagttatatttcaacttagtagtttacgggtcaaaataccaaaataagttatgtaaat |
200 |
Q |
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| T |
44071419 |
ttattatctcaaatttaaattgtcaacacctgtgaatttcttaagttatatttcaacttagtagtttacgggtcaaaataccaaaataagtgatgtaaat |
44071518 |
T |
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| Q |
201 |
atctaattttaaattgtttctttcacaattgtatcctt |
238 |
Q |
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| T |
44071519 |
atctaattttaaattgtttctgtcacaattgtatcctt |
44071556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 44071554 - 44071583
Alignment:
| Q |
252 |
cttgcttaacaattttcaacctcaagacaa |
281 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44071554 |
cttgcttaacaattttcaacctcaagacaa |
44071583 |
T |
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