View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_34 (Length: 305)
Name: NF1583_low_34
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_34 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 3451094 - 3451400
Alignment:
| Q |
1 |
tcaggaatatggaggaagagaccaaagaaggtactacaaatgcaggggaagaaaaacagaacaagagtgactcaaaacctcctgaacctcaaaaagatta |
100 |
Q |
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| T |
3451094 |
tcaggaatatggaggaagagatcaaagaaggtacaccaaatgcaggggaagaaaaacagaacaagagtgactcaaaacctcctgaacctcaaaaagatta |
3451193 |
T |
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| Q |
101 |
cattcatgtcagagcaagaagaggtcaagctactgacagtcacagtcttgcagaacgagtaagaattaaattactgctttttgtttctctatcaaaaata |
200 |
Q |
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| T |
3451194 |
cattcatgtcagagcaagaagaggtcaagctactgacagtcacagtcttgcagaacgagtaagaattaaattactgctttttgtttctctatcaaaaata |
3451293 |
T |
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| Q |
201 |
gnnnnnnnnnnnnnnnnnngt--gaaatcggttacctcacgacctttaatatttacataaaatcgtggataaactcgacttatacaattgaggctctgat |
298 |
Q |
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| T |
3451294 |
gttttttttatttttattttttataaattggttagctcgcgacctttaatatttacataaaattgtggataaactcgacttatacaattgcggctctgat |
3451393 |
T |
|
| Q |
299 |
atagact |
305 |
Q |
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| T |
3451394 |
atagact |
3451400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 26003060 - 26002992
Alignment:
| Q |
94 |
aagattacattcatgtcagagcaagaagaggtcaagctactgacagtcacagtcttgcagaacgagtaa |
162 |
Q |
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| T |
26003060 |
aagattacatccatgttcgagctagaaggggtcaagctactgatagccacagtcttgcagaacgtgtaa |
26002992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 18810283 - 18810399
Alignment:
| Q |
51 |
gaaaaacagaacaagagtgactcaaaacctcctgaacctcaaaaagattacattcatgtcagagcaagaagaggtcaagctactgacagtcacagtcttg |
150 |
Q |
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| T |
18810283 |
gaaaaacagaataagagcaattcaaaacctcctgaggctccaaaggattacattcatgtcagagcaagaagaggtcaagctactgatagccatagtcttg |
18810382 |
T |
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| Q |
151 |
cagaacgagtaagaatt |
167 |
Q |
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| T |
18810383 |
cagaaagagtaagaatt |
18810399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 31420778 - 31420830
Alignment:
| Q |
103 |
ttcatgtcagagcaagaagaggtcaagctactgacagtcacagtcttgcagaa |
155 |
Q |
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| T |
31420778 |
ttcatgttagagcaagaagaggtcaagctactgatagtcacagtctagcagaa |
31420830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 4803346 - 4803292
Alignment:
| Q |
101 |
cattcatgtcagagcaagaagaggtcaagctactgacagtcacagtcttgcagaa |
155 |
Q |
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| T |
4803346 |
cattcatgtgagagctagaagaggtcaagccacaaacagtcacagtcttgcagaa |
4803292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 16270457 - 16270389
Alignment:
| Q |
93 |
aaagattacattcatgtcagagcaagaagaggtcaagctactgacagtcacagtcttgcagaacgagta |
161 |
Q |
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| T |
16270457 |
aaagactacatccatgtccgagctagaaggggtcaagctactgatagccatagtcttgcagaaagagta |
16270389 |
T |
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