View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1583_low_35 (Length: 305)

Name: NF1583_low_35
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1583_low_35
NF1583_low_35
[»] chr4 (12 HSPs)
chr4 (14-297)||(21539247-21539530)
chr4 (189-298)||(1684926-1685036)
chr4 (189-298)||(1152060-1152170)
chr4 (159-297)||(47066009-47066155)
chr4 (189-286)||(4904126-4904224)
chr4 (189-298)||(43600283-43600393)
chr4 (159-286)||(53300330-53300465)
chr4 (190-297)||(24558970-24559078)
chr4 (189-286)||(4881055-4881153)
chr4 (189-249)||(48464056-48464116)
chr4 (189-299)||(37750963-37751073)
chr4 (24-68)||(21710171-21710215)
[»] chr5 (18 HSPs)
chr5 (159-298)||(17037522-17037669)
chr5 (189-298)||(5079038-5079148)
chr5 (191-296)||(19985013-19985119)
chr5 (189-286)||(30786283-30786381)
chr5 (189-296)||(23679457-23679565)
chr5 (189-296)||(23855246-23855354)
chr5 (189-296)||(12042152-12042261)
chr5 (189-292)||(7410840-7410944)
chr5 (158-249)||(31068987-31069084)
chr5 (189-249)||(9333585-9333645)
chr5 (202-297)||(37233061-37233157)
chr5 (204-297)||(42076078-42076172)
chr5 (194-271)||(10869458-10869535)
chr5 (189-238)||(18191884-18191933)
chr5 (189-249)||(9354413-9354473)
chr5 (189-249)||(40402033-40402093)
chr5 (196-234)||(31571052-31571090)
chr5 (194-235)||(16411611-16411652)
[»] chr7 (14 HSPs)
chr7 (189-299)||(9242457-9242568)
chr7 (189-298)||(26621065-26621175)
chr7 (197-299)||(26608512-26608615)
chr7 (194-296)||(30089756-30089859)
chr7 (189-298)||(20277334-20277444)
chr7 (189-296)||(26619080-26619187)
chr7 (189-298)||(4685377-4685487)
chr7 (189-286)||(26224964-26225062)
chr7 (159-285)||(26205402-26205536)
chr7 (189-286)||(10022140-10022238)
chr7 (197-246)||(3374325-3374374)
chr7 (189-249)||(16170287-16170347)
chr7 (202-296)||(27135958-27136053)
chr7 (189-297)||(8241614-8241722)
[»] chr8 (19 HSPs)
chr8 (158-298)||(5528721-5528869)
chr8 (189-298)||(19369884-19369994)
chr8 (189-298)||(19448464-19448574)
chr8 (189-298)||(19532502-19532612)
chr8 (189-298)||(17634445-17634555)
chr8 (189-298)||(45356086-45356196)
chr8 (189-292)||(28249055-28249159)
chr8 (194-295)||(6801807-6801909)
chr8 (189-297)||(25638823-25638932)
chr8 (189-296)||(18766933-18767041)
chr8 (158-296)||(25637622-25637768)
chr8 (189-296)||(29345447-29345556)
chr8 (189-267)||(31347365-31347444)
chr8 (194-299)||(5650918-5651024)
chr8 (189-249)||(6403609-6403669)
chr8 (194-295)||(14997642-14997744)
chr8 (189-249)||(29553645-29553705)
chr8 (193-297)||(31369081-31369186)
chr8 (206-296)||(6223434-6223525)
[»] chr1 (16 HSPs)
chr1 (189-300)||(28636919-28637031)
chr1 (190-296)||(12189969-12190076)
chr1 (189-286)||(897471-897568)
chr1 (192-249)||(5911688-5911745)
chr1 (158-242)||(37097371-37097462)
chr1 (189-298)||(51758769-51758879)
chr1 (193-249)||(3399642-3399698)
chr1 (189-271)||(16222794-16222877)
chr1 (189-294)||(18308164-18308270)
chr1 (202-298)||(1843981-1844078)
chr1 (194-297)||(39368614-39368719)
chr1 (193-247)||(15214347-15214401)
chr1 (192-249)||(15204613-15204670)
chr1 (189-249)||(13208628-13208688)
chr1 (197-233)||(15193943-15193979)
chr1 (189-249)||(17112941-17113001)
[»] scaffold0684 (1 HSPs)
scaffold0684 (189-299)||(720-831)
[»] scaffold0069 (1 HSPs)
scaffold0069 (189-298)||(40672-40782)
[»] chr6 (19 HSPs)
chr6 (189-298)||(11936741-11936851)
chr6 (189-298)||(11948721-11948831)
chr6 (189-298)||(16734821-16734931)
chr6 (189-299)||(6684110-6684220)
chr6 (189-298)||(17719697-17719807)
chr6 (189-296)||(14669322-14669430)
chr6 (189-298)||(12591849-12591959)
chr6 (189-298)||(15361731-15361841)
chr6 (189-298)||(1942585-1942695)
chr6 (202-286)||(29667901-29667986)
chr6 (189-249)||(15690454-15690514)
chr6 (189-271)||(23264497-23264580)
chr6 (194-287)||(9631140-9631234)
chr6 (192-296)||(10070674-10070778)
chr6 (193-278)||(4485559-4485645)
chr6 (194-298)||(23904327-23904431)
chr6 (189-253)||(30481248-30481312)
chr6 (190-242)||(34374842-34374894)
chr6 (194-249)||(10935805-10935860)
[»] chr3 (18 HSPs)
chr3 (189-298)||(2943188-2943298)
chr3 (189-296)||(1627923-1628031)
chr3 (189-298)||(13846008-13846118)
chr3 (189-292)||(2550182-2550286)
chr3 (189-297)||(7407729-7407838)
chr3 (194-286)||(9633428-9633521)
chr3 (194-294)||(26707880-26707981)
chr3 (189-298)||(1654592-1654702)
chr3 (189-249)||(16457355-16457415)
chr3 (194-296)||(36035310-36035413)
chr3 (190-271)||(5498495-5498577)
chr3 (197-298)||(35083000-35083102)
chr3 (194-244)||(27259474-27259524)
chr3 (190-233)||(1613253-1613296)
chr3 (205-298)||(2179959-2180053)
chr3 (205-249)||(27713463-27713507)
chr3 (220-296)||(26735681-26735758)
chr3 (258-298)||(27259428-27259468)
[»] chr2 (11 HSPs)
chr2 (189-298)||(31342690-31342800)
chr2 (189-297)||(7718201-7718310)
chr2 (159-297)||(30266982-30267128)
chr2 (165-297)||(44920943-44921082)
chr2 (190-249)||(41573410-41573469)
chr2 (189-298)||(15513683-15513793)
chr2 (194-299)||(24479173-24479279)
chr2 (196-298)||(40016614-40016718)
chr2 (194-298)||(7702450-7702555)
chr2 (194-297)||(11017478-11017582)
chr2 (206-298)||(22966558-22966651)
[»] scaffold0576 (1 HSPs)
scaffold0576 (189-298)||(6715-6825)
[»] scaffold0002 (1 HSPs)
scaffold0002 (189-292)||(446263-446367)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 21539530 - 21539247
Alignment:
Q  14 caattagaaggagggacaatccaataaaaatgaagagtaattgaagcaggaggagcatgacatttgacaacaaaaaatacttcaaattttgtaactctta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21539530 caattagaaggagggacaatccaataaaaatgaagagtaattgaagcaggaggagcatgacatttgacaacaaaaaatacttcaaattttgtaactctta 21539431  T
Q  114 aatagatgaataaatgttgcccctagataaatctcgagaaagagacactattacaacaatgacatttagtaacacttgtaactaaatcaagaaaaatgtt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  21539430 aatagatgaataaatgttgcccctagataaatctcgagaaagagacactattacaacaatgacatttagtaatatttgtaactaaatcaaggaaaatgtt 21539331  T
Q  214 actgattaaatttagtaacatttaaacaattgttagataagtccttgttactaaagagatttagttacattttttagtattatc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21539330 actgattaaatttagtaacatttaaacaattgttagataagtccttgttactaaagagatttagttacattttttagtattatc 21539247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 1685036 - 1684926
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| |||||||||| |||     
T  1685036 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttacaattta 1684937  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  1684936 tagtattatct 1684926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 1152060 - 1152170
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||| ||||||||||||||| ||||||||| | |||| | ||||||||||||||| |||||| ||||||||||||| |||||||||| |||     
T  1152060 ttgtaactaaattaagaaaaatgttactaattaaattttgcaacactcaaacaattgttagataaagtccgtgttactaaagagttttagttacagttta 1152159  T
Q  288 tagtattatct 298  Q
    || ||||||||    
T  1152160 taatattatct 1152170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 297
Target Start/End: Complemental strand, 47066155 - 47066009
Alignment:
Q  159 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 251  Q
    ||||| ||||| |||||||||||||||||||||       ||||||||||||||||||||||| | ||||||||||||||||  | |||||||||||| |    
T  47066155 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggt 47066056  T
Q  252 -aagtccttgttactaaagagatttagttacattttttagtattatc 297  Q
     ||| || |||||| |||||| |||||||||||||| ||||| ||||    
T  47066055 aaagcccgtgttaccaaagagttttagttacattttatagtactatc 47066009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 4904224 - 4904126
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 286  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| | |||  ||||||||||||| | ||||||||||||||    
T  4904224 ttgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaagcacttgttactaaagtgctttagttacatttt 4904126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 43600283 - 43600393
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| || | || |||||||||||| | ||| || ||||||||||| | ||||||||||||||     
T  43600283 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttta 43600382  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  43600383 tagtactatct 43600393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 53300330 - 53300465
Alignment:
Q  159 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 251  Q
    ||||| ||||| |||||||||||||||||||||       ||| ||||||||||||||||||| | ||||||||||||||||  |||||||||||||| |    
T  53300330 cactactacaataatgacatttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggt 53300429  T
Q  252 -aagtccttgttactaaagagatttagttacatttt 286  Q
     ||| || |||||| |||||| ||||||||||||||    
T  53300430 aaagcccgtgttaccaaagagttttagttacatttt 53300465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 297
Target Start/End: Complemental strand, 24559078 - 24558970
Alignment:
Q  190 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataa-gtccttgttactaaagagatttagttacatttttt 288  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||| | |  ||||||||||||  |||||| | ||||| |    
T  24559078 tgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaacggctgtgttactaaagaattttagtgatattttat 24558979  T
Q  289 agtattatc 297  Q
    |||||||||    
T  24558978 agtattatc 24558970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 4881153 - 4881055
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 286  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||  | ||||||||| | |||||| ||||||||||| | ||||||| ||||||    
T  4881153 ttgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaaagtccgtgttactaaagtgctttagttgcatttt 4881055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 48464056 - 48464116
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||| ||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||    
T  48464056 ttgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttag 48464116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 37751073 - 37750963
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacattttt 287  Q
    |||| |||||||||| |||||||||||| |||||| | ||||||||||   ||||||||||||||  ||  |||||||||  || ||||||||||||||     
T  37751073 ttgtcactaaatcaa-aaaaatgttactaattaaaatcagtaacatttgcgcaattgttagataaagccaatgttactaagaagctttagttacatttta 37750975  T
Q  288 tagtattatcta 299  Q
    ||||||||||||    
T  37750974 tagtattatcta 37750963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 21710215 - 21710171
Alignment:
Q  24 gagggacaatccaataaaaatgaagagtaattgaagcaggaggag 68  Q
    |||||||| ||||||||| |  |||||||||||||||||||||||    
T  21710215 gagggacattccaataaatagaaagagtaattgaagcaggaggag 21710171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 17037522 - 17037669
Alignment:
Q  159 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 251  Q
    ||||| ||||| |||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |    
T  17037522 cactactacaataatgacatttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 17037621  T
Q  252 -aagtccttgttactaaagagatttagttacattttttagtattatct 298  Q
     |||||  ||||||||||||| |||||||||||||| |||||||||||    
T  17037622 aaagtcagtgttactaaagagttttagttacattttatagtattatct 17037669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 5079148 - 5079038
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||     
T  5079148 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttta 5079049  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  5079048 tagtactatct 5079038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 19985013 - 19985119
Alignment:
Q  191 gtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttttta 289  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||| || ||||||||| | ||||||  |||||||||||| |||||||||||||| ||    
T  19985013 gtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaagtccaggttactaaagagttttagttacattttata 19985112  T
Q  290 gtattat 296  Q
    |||||||    
T  19985113 gtattat 19985119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 30786283 - 30786381
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagt-ccttgttactaaagagatttagttacatttt 286  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||| ||| | ||||||||||||| ||||||||| |||||||    
T  30786283 ttgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaatgccttgttactaaaaagatttagtcacatttt 30786381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 23679457 - 23679565
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||| | ||||||||| | ||||||  ||||||| |||||| |||| | ||||||||||||| ||||||||||||||     
T  23679457 ttgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagttttagttacatttta 23679556  T
Q  288 tagtattat 296  Q
    |||||||||    
T  23679557 tagtattat 23679565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 23855354 - 23855246
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||| | ||||||||| | ||||||  ||||||| |||||| |||| | ||||||||||||| ||||||||||||||     
T  23855354 ttgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagttttagttacatttta 23855255  T
Q  288 tagtattat 296  Q
    |||||||||    
T  23855254 tagtattat 23855246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 12042261 - 12042152
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataa--gtccttgttactaaagagatttagttacatttt 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||     | | ||||||||||| ||||||||||||||    
T  12042261 ttgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggtaaagaaacctattactaaagagttttagttacatttt 12042162  T
Q  287 ttagtattat 296  Q
     || ||||||    
T  12042161 atattattat 12042152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 292
Target Start/End: Original strand, 7410840 - 7410944
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||     
T  7410840 ttgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttta 7410939  T
Q  288 tagta 292  Q
    |||||    
T  7410940 tagta 7410944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 31069084 - 31068987
Alignment:
Q  158 acactattacaacaatgacatttagtaacactt-------gtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||||| ||||| ||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  31069084 acactactacaataatgacatttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttag 31068987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 9333645 - 9333585
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  9333645 ttgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttag 9333585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 37233061 - 37233157
Alignment:
Q  202 aagaaaaatgttactgattaaatttagtaacatttaaacaattgttagata-agtccttgttactaaagagatttagttacattttttagtattatc 297  Q
    |||||||| |||||| ||||||||||||||||||| | |||||||||| || ||||| |||||||||| || || ||| ||||||| ||||||||||    
T  37233061 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaacattttatagtattatc 37233157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 297
Target Start/End: Original strand, 42076078 - 42076172
Alignment:
Q  204 gaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagtattatc 297  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||| |||||||||| || || ||  | ||||| ||||||||||    
T  42076078 gaaaattgttactaattaaatttagtaacatttgaacaattgttagataaagtccatgttactaaaaagcttcaggaatattttatagtattatc 42076172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 10869458 - 10869535
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtccttgttactaaagag 271  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||| ||  ||| | |||||||||||    
T  10869458 actaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccctcttactaaagag 10869535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 18191933 - 18191884
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaa 238  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  18191933 ttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttaa 18191884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 9354473 - 9354413
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||||||| ||||||||||||||||||| |||||||||| |||||||| | ||||||||||    
T  9354473 ttgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttag 9354413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 40402093 - 40402033
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||| ||||||| ||||||||||||||| |||||||||||| || ||| ||||||||||||    
T  40402093 ttgtgactaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttag 40402033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 31571052 - 31571090
Alignment:
Q  196 taaatcaagaaaaatgttactgattaaatttagtaacat 234  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  31571052 taaaacaagaaaaatgttactgattaaaattagtaacat 31571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 16411611 - 16411652
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatt 235  Q
    ||||||||| |||||||||||||||||| || ||||||||||    
T  16411611 actaaatcacgaaaaatgttactgattatatctagtaacatt 16411652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 9242568 - 9242457
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||| || |||||||||||||| |||||| ||||||||||||| ||||||||||||||     
T  9242568 ttgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttactaaagagttttagttacatttta 9242469  T
Q  288 tagtattatcta 299  Q
    ||||||||||||    
T  9242468 tagtattatcta 9242457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 26621175 - 26621065
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||  || ||||||||||||| ||||||||||||||     
T  26621175 ttgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaaagccatgttactaaagagctttagttacatttta 26621076  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  26621075 tagtattatct 26621065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 26608615 - 26608512
Alignment:
Q  197 aaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagtatta 295  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||||||||| ||||||| |||||| ||||| ||    
T  26608615 aaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaagcccatgttactaaagagctttagttgcattttatagtacta 26608516  T
Q  296 tcta 299  Q
    ||||    
T  26608515 tcta 26608512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 30089756 - 30089859
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtta-gataagtccttgttactaaagagatttagttacattttttagta 292  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||| || ||||||||||||| |||||||||||||| |||||    
T  30089756 actaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaagagctttagttacattttatagta 30089855  T
Q  293 ttat 296  Q
    ||||    
T  30089856 ttat 30089859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 20277444 - 20277334
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    ||||||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||| | |||  | ||||||||||||| |||||||||||| |     
T  20277444 ttgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagagctttagttacattata 20277345  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  20277344 tagtattatct 20277334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 26619187 - 26619080
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacattttt 287  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||| |||| ||||||||||||  |||||||||||||      
T  26619187 ttgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattg-taggtaaatcctatgttactaaagaactttagttacatttga 26619089  T
Q  288 tagtattat 296  Q
    |||||||||    
T  26619088 tagtattat 26619080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 4685487 - 4685377
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||| | ||||||||||| |||| || |||||||||||| | ||| || | ||||||||| | ||||||||||||||     
T  4685487 ttgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaagtgttttagttacatttta 4685388  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  4685387 tagtactatct 4685377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 26225062 - 26224964
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 286  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| || ||||||| |||| | ||| |  ||||||||||||| ||||||| ||||||    
T  26225062 ttgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttactaaagagttttagtttcatttt 26224964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 26205536 - 26205402
Alignment:
Q  159 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 251  Q
    ||||| ||||| ||||||||||||| |||||||       ||||||||||||||||||||||||| |||||||||||||||| || || ||||| ||| |    
T  26205536 cactactacaataatgacatttagtgacacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggt 26205437  T
Q  252 -aagtccttgttactaaagagatttagttacattt 285  Q
     |||    ||||||||||||| ||||||| |||||    
T  26205436 aaagctggtgttactaaagagttttagtttcattt 26205402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 10022140 - 10022238
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 286  Q
    ||||||||||||||  |||||||||||| ||||| ||||||||||  | |||||||||||| | |||  | ||||||||||||  ||||||||||||||    
T  10022140 ttgtaactaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaagctcgtgttactaaagaattttagttacatttt 10022238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 3374325 - 3374374
Alignment:
Q  197 aaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgt 246  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  3374325 aaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgt 3374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 16170287 - 16170347
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    ||||||| ||||||  |||| ||||||| |||||||||||||||| |||||||||||||||    
T  16170287 ttgtaaccaaatcacaaaaagtgttactaattaaatttagtaacacttaaacaattgttag 16170347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 27135958 - 27136053
Alignment:
Q  202 aagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacattttttagtattat 296  Q
    ||||||||||||| |||||| || || |||||||| ||||||||||||||||  ||| ||||||||||||| ||  || ||| ||||| |||||||    
T  27135958 aagaaaaatgttattgattatatctaataacatttgaacaattgttagataaagcctgtgttactaaagagtttcggtaacagtttttggtattat 27136053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 8241614 - 8241722
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||| ||||||| ||||||||||| |||||| ||| |||| |||| ||||||||| || ||| ||||| ||||||  || |||||||| ||     
T  8241614 ttgtaactaaatgaagaaaa-tgttactgattgaatttaataatatttgaacagttgttagataaaatccatgttattaaagaacttcagttacatatta 8241712  T
Q  288 tagtattatc 297  Q
    || |||||||    
T  8241713 taatattatc 8241722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 298
Target Start/End: Original strand, 5528721 - 5528869
Alignment:
Q  158 acactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttaga 250  Q
    |||||| ||||| |||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||    
T  5528721 acactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttaga 5528820  T
Q  251 t-aagtccttgttactaaagagatttagttacattttttagtattatct 298  Q
    | |||||  ||||||||||||| ||||||||||||||  ||||||||||    
T  5528821 taaagtctgtgttactaaagagttttagttacattttacagtattatct 5528869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 19369994 - 19369884
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| ||||||||||||||     
T  19369994 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttacatttta 19369895  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  19369894 tagtattatct 19369884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 19448464 - 19448574
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| |||||||| |||||     
T  19448464 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttatatttta 19448563  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  19448564 tagtattatct 19448574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 19532612 - 19532502
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| |||||||| |||||     
T  19532612 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttatatttta 19532513  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  19532512 tagtattatct 19532502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 17634555 - 17634445
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| || |||||||| ||| | ||| || |||||||||||| |||||||||||||||     
T  17634555 ttgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaagaaatttagttacatttta 17634456  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  17634455 tagtactatct 17634445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 45356196 - 45356086
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||     
T  45356196 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttta 45356097  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  45356096 tagtactatct 45356086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 28249159 - 28249055
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||     
T  28249159 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttta 28249060  T
Q  288 tagta 292  Q
    |||||    
T  28249059 tagta 28249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 6801909 - 6801807
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagta 292  Q
    |||||||||| |||||||||||| |||||||||||||||| || |||||||||||| | ||| || ||||||||||||| ||||||||||||||  ||||    
T  6801909 actaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaagcccctgttactaaagagttttagttacattttagagta 6801810  T
Q  293 tta 295  Q
    |||    
T  6801809 tta 6801807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 25638823 - 25638932
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||  || ||||||||||| | ||||||||||||||     
T  25638823 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaagtgttttagttacatttta 25638922  T
Q  288 tagtattatc 297  Q
    ||||| ||||    
T  25638923 tagtactatc 25638932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 18766933 - 18767041
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||| ||| | ||||||||| | |||| | ||||||||||||| | |||| | ||||||||||||| ||||||||||||||     
T  18766933 ttgtaactaaatcaagaaaaatattattaattaaattttgcaacactcaaacaattgttaggtaaagtacgtgttactaaagagttttagttacatttta 18767032  T
Q  288 tagtattat 296  Q
    |||||||||    
T  18767033 tagtattat 18767041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 296
Target Start/End: Original strand, 25637622 - 25637768
Alignment:
Q  158 acactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttaga 250  Q
    |||||| ||||| |||||||||||||||||||||       ||||||||| ||||||| ||||||| ||||||||||| |||| |  ||||||||||||     
T  25637622 acactactacaataatgacatttagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttagg 25637721  T
Q  251 t-aagtccttgttactaaagagatttagttacattttttagtattat 296  Q
    | ||| || ||||||||||||  |||||||||||||| |||||||||    
T  25637722 taaagcccgtgttactaaagaattttagttacattttatagtattat 25637768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 29345447 - 29345556
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagaga-tttagttacatttt 286  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||| | ||| || | |||||||| | | ||||||||||||||    
T  29345447 ttgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaagcccctcttactaaacaaactttagttacatttt 29345546  T
Q  287 ttagtattat 296  Q
     |||||||||    
T  29345547 atagtattat 29345556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 31347365 - 31347444
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaa 267  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||||| | |||||||||||||| |||| |||||||||    
T  31347365 ttgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagataaatcctgtgttactaa 31347444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 5651024 - 5650918
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagta 292  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||| | ||  ||||||||| ||| || ||||||| |||||| | |||    
T  5651024 actaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaacccttgttacaaaaaagctttagttgcattttatggta 5650925  T
Q  293 ttatcta 299  Q
    |||||||    
T  5650924 ttatcta 5650918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 6403609 - 6403669
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  6403609 ttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttag 6403669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 14997642 - 14997744
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagta 292  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||  | ||||||||| | ||  || ||||||||||||| ||||||||| |||| |||||    
T  14997642 actaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaacccatgttactaaagagctttagttaccttttatagta 14997741  T
Q  293 tta 295  Q
    |||    
T  14997742 tta 14997744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 29553645 - 29553705
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||||||| | ||||||||||    
T  29553645 ttgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttag 29553705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 31369186 - 31369081
Alignment:
Q  193 aactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacattttttagt 291  Q
    |||||||||| || |||||||||| ||||| |||||| |||||||||||| |||||  |||  | | ||||||||||||| || ||||||||||| |||     
T  31369186 aactaaatcacgataaatgttactaattaagtttagtgacatttaaacaaatgttatgtaaagcttatgttactaaagagtttcagttacattttatagg 31369087  T
Q  292 attatc 297  Q
    ||||||    
T  31369086 attatc 31369081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 6223434 - 6223525
Alignment:
Q  206 aaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagtattat 296  Q
    |||| ||||||||||||||||||||||||||  | ||||||||| | |||  | ||||||||||||| |||||||||| ||| || ||||||    
T  6223434 aaaacgttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagagttttagttacactttataatattat 6223525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 28636919 - 28637031
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||| | |||||  |||| |||||||||||||||||||||||     
T  28636919 ttgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaagtcactgttgctaaagagatttagttacatttta 28637018  T
Q  288 tagtattatctac 300  Q
    ||||| |||||||    
T  28637019 tagtaatatctac 28637031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 296
Target Start/End: Original strand, 12189969 - 12190076
Alignment:
Q  190 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttttt 288  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| | ||| || ||||||||||||| |||||| |  |||| |    
T  12189969 tgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaagcccgtgttactaaagagttttagtaattttttat 12190068  T
Q  289 agtattat 296  Q
    ||||||||    
T  12190069 agtattat 12190076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 897471 - 897568
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtccttgttactaaagagatttagttacatttt 286  Q
    |||| ||||||| |||||||||||| || |||||||||||||||| || |||||||||||| ||||| | ||||||||||||| | ||||||||||||    
T  897471 ttgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggtaagttcatgttactaaagagctatagttacatttt 897568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 5911745 - 5911688
Alignment:
Q  192 taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  5911745 taactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttag 5911688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 37097462 - 37097371
Alignment:
Q  158 acactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaa 242  Q
    |||||| ||||| |||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  37097462 acactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttgaacaa 37097371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 51758769 - 51758879
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||| | ||||||||||| |||| |  ||||||| |||| | |||  | | ||||||||||| ||||||||||||||     
T  51758769 ttgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattactaaagagttttagttacatttta 51758868  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  51758869 tagtattatct 51758879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 3399642 - 3399698
Alignment:
Q  193 aactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttag 3399698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 16222794 - 16222877
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagag 271  Q
    |||||||||||||||||||||||||||| || ||||||||||||| || || ||||||||| | ||| || |||||||||||||    
T  16222794 ttgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaagag 16222877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 18308164 - 18308270
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacattttt 287  Q
    |||| |||||||||||||||||||||| ||||| | ||| ||||||||  ||||||||||| |||  ||| ||||||| ||| | ||||||||||||||     
T  18308164 ttgttactaaatcaagaaaaatgttacagattacaattattaacatttctacaattgttaggtaaagcctgtgttactgaagggctttagttacatttta 18308263  T
Q  288 tagtatt 294  Q
    |||||||    
T  18308264 tagtatt 18308270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 1843981 - 1844078
Alignment:
Q  202 aagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagtattatct 298  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||| | ||  || ||||||| ||| | |||| || |||||| |||||||||||    
T  1843981 aagaaaaatgttactgattgaatttagtaacatttgaacaattgttaggtaaaccccatgttactgaagggctttaattgcattttatagtattatct 1844078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 39368719 - 39368614
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtta-gataagtccttgttactaaagagatttagttacattttt-tagt 291  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||| |  |||  | || |||||||||| || |||||||||||| ||||    
T  39368719 actaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttaggcaaagcacatgctactaaagagcttcagttacatttttatagt 39368620  T
Q  292 attatc 297  Q
    ||||||    
T  39368619 attatc 39368614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 15214347 - 15214401
Alignment:
Q  193 aactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtt 247  Q
    |||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||    
T  15214347 aactaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgtt 15214401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 15204613 - 15204670
Alignment:
Q  192 taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||||||||||||||||||||| || | |||||||||||||| || ||||||||||||    
T  15204613 taactaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttag 15204670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 13208628 - 13208688
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||||| ||||| ||||||||||||||| ||||||||||||| || || ||| ||||||||    
T  13208628 ttgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttag 13208688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 15193943 - 15193979
Alignment:
Q  197 aaatcaagaaaaatgttactgattaaatttagtaaca 233  Q
    |||||||||||||||||||| |||||||||| |||||    
T  15193943 aaatcaagaaaaatgttactaattaaatttattaaca 15193979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 17112941 - 17113001
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||| |||||||||||||||||  ||||  |||||||| |||||| || ||||||||||||    
T  17112941 ttgttactaaatcaagaaaaatagtactagttaaattttgtaacacttgaacaattgttag 17113001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 831 - 720
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||| ||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| ||||||||||||||     
T  831 ttgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagttttagttacatttta 732  T
Q  288 tagtattatcta 299  Q
    ||||||||||||    
T  731 tagtattatcta 720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 40782 - 40672
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||| ||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| ||||||||||||||     
T  40782 ttgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagttttagttacatttta 40683  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  40682 tagtattatct 40672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 11936851 - 11936741
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| ||| || ||||||||||| | ||||||||||||||     
T  11936851 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacatttta 11936752  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  11936751 tagtactatct 11936741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 11948831 - 11948721
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| ||| || ||||||||||| | ||||||||||||||     
T  11948831 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacatttta 11948732  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  11948731 tagtactatct 11948721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 16734821 - 16734931
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| | ||| || ||||||||||| | ||||||||||||||     
T  16734821 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttta 16734920  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  16734921 tagtactatct 16734931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 6684110 - 6684220
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| |  ||| |||||||| | |||||| ||||||||||||| ||||||||||||||     
T  6684110 ttgtaacttaatcaagaaaaatgttactaattaaatttagtaacactcgaac-attgttaggtaaagtccatgttactaaagagttttagttacatttta 6684208  T
Q  288 tagtattatcta 299  Q
    ||||||||||||    
T  6684209 tagtattatcta 6684220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 17719807 - 17719697
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||| ||| | |||| |  |||||||||||||| |||||| ||||||||||||| |||||||||| |||     
T  17719807 ttgtaactaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttacaattta 17719708  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  17719707 tagtattatct 17719697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 14669430 - 14669322
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  || ||||||||| | |||||| ||||||||||||| ||||||||||||||     
T  14669430 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaagagttttagttacatttta 14669331  T
Q  288 tagtattat 296  Q
    |||||||||    
T  14669330 tagtattat 14669322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 12591849 - 12591959
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||| | |||||||||||||||  |  |||||||||||| | ||| || ||||||||||||| |||||||||| |||     
T  12591849 ttgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaagagttttagttacaattta 12591948  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  12591949 tagtattatct 12591959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 15361731 - 15361841
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| |  ||||||||||  | ||||||||||||||     
T  15361731 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttttagttacatttta 15361830  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  15361831 tagtactatct 15361841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 1942585 - 1942695
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcc-ttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||| | |||||| ||| |||  || |||||| |||| |  ||||||||||||||     
T  1942585 ttgtaactaaatcaagaaaaatattactgataaaatttaataacatttgagcaattgctaggtaaaacctttgttattaaatatctttagttacatttta 1942684  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  1942685 tagtattatct 1942695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 29667986 - 29667901
Alignment:
Q  202 aagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacatttt 286  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| |||  | | ||||| |||||||||||||| |||||||    
T  29667986 aagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagcttgtgttattaaagagatttagtaacatttt 29667901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 15690454 - 15690514
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||    
T  15690454 ttgtaactaaatcaagaaaaatgttactaattaaatttagtgacactcaaacaattgttag 15690514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 23264580 - 23264497
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagag 271  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||  |||||||||||| | || ||| |||||||||||||    
T  23264580 ttgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaaaatccgtgttactaaagag 23264497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 9631234 - 9631140
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagata-agtccttgttactaaagagatttagttacattttt 287  Q
    ||||||||||||| || |||||| | ||||||||||||||||| ||||||||||||  | || || |||||||| |||| |||||||||||||||    
T  9631234 actaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttaggcatagcccctgttactatagagttttagttacattttt 9631140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 296
Target Start/End: Original strand, 10070674 - 10070778
Alignment:
Q  192 taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtta-gataagtccttgttactaaagagatttagttacattttttag 290  Q
    |||||||||||| |||| ||||||| |||||||||| ||||| | ||| |||||||| |  |||||| |||||||||| || |||||||||||||| |||    
T  10070674 taactaaatcaacaaaattgttactaattaaatttaataacactcaaataattgttacgtaaagtccgtgttactaaa-agttttagttacattttatag 10070772  T
Q  291 tattat 296  Q
    ||||||    
T  10070773 tattat 10070778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 4485645 - 4485559
Alignment:
Q  193 aactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagt 278  Q
    |||||||||||| |||||| |||| |||||||||||||| |||| || ||||||||| | |||||| ||||| |||| || ||||||    
T  4485645 aactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaaagtccgtgttattaaatagttttagt 4485559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 23904431 - 23904327
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagta 292  Q
    ||||||| |||||||| |||||| | | ||||||||||||||| |||||||||||| | ||| || | |||| |||||| |||| ||||| ||| |||||    
T  23904431 actaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaagcccctcttacaaaagaggttta-ttacactttatagta 23904333  T
Q  293 ttatct 298  Q
    ||||||    
T  23904332 ttatct 23904327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 30481312 - 30481248
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataa 253  Q
    |||| |||||||||||||||||||| || ||||||| |||||||| || ||||| | ||||||||    
T  30481312 ttgttactaaatcaagaaaaatgttgctaattaaatctagtaacaattgaacaaattttagataa 30481248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 34374842 - 34374894
Alignment:
Q  190 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaa 242  Q
    ||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||    
T  34374842 tgtaattaaatcaagaaaaatgttactaattatattttgtaacatttgaacaa 34374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 10935860 - 10935805
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    ||||||||| ||||||||||||| |||| ||  |||||||||| ||||||||||||    
T  10935860 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttag 10935805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 2943298 - 2943188
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtta-gataagtccttgttactaaagagatttagttacattttt 287  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||  ||||||||||| | |||| || ||||||||||| | ||||||||||||||     
T  2943298 ttgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaagtgttttagttacatttta 2943199  T
Q  288 tagtattatct 298  Q
    |||||||||||    
T  2943198 tagtattatct 2943188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 1628031 - 1627923
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtt-agataagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| || |||||||||| ||  |||||| |||||| |||||| ||||||||||||||     
T  1628031 ttgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgtgttacaaaagagttttagttacatttta 1627932  T
Q  288 tagtattat 296  Q
    |||||||||    
T  1627931 tagtattat 1627923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 13846008 - 13846118
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||     
T  13846008 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttta 13846107  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  13846108 tagtactatct 13846118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 292
Target Start/End: Original strand, 2550182 - 2550286
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| |||  ||| ||||||||||| | ||||||||||||||     
T  2550182 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaagtgttttagttacatttta 2550281  T
Q  288 tagta 292  Q
    |||||    
T  2550282 tagta 2550286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 297
Target Start/End: Complemental strand, 7407838 - 7407729
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||     
T  7407838 ttgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttta 7407739  T
Q  288 tagtattatc 297  Q
    ||||| ||||    
T  7407738 tagtactatc 7407729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 9633521 - 9633428
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 286  Q
    |||||||| | |||||||||||| |||||||||||| ||||||||||||||||||| | ||| || ||||||||||||| ||||||||||||||    
T  9633521 actaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagagttttagttacatttt 9633428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 26707880 - 26707981
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||  ||||||||||||| || ||| ||||||  |||||    
T  26707880 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaagaggttcagtaacatttcatagta 26707979  T
Q  293 tt 294  Q
    ||    
T  26707980 tt 26707981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 1654592 - 1654702
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||  |||  ||| ||||| ||||| | ||||||||||||||     
T  1654592 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaagcctgtgttattaaagtgttttagttacatttta 1654691  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  1654692 tagtactatct 1654702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 16457415 - 16457355
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  16457415 ttgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttag 16457355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 36035310 - 36035413
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagta 292  Q
    |||||||||||||||||  |||| |||||||||||||||| ||  ||||||||||| | |||  | ||||||||||||| |||||||||||||| |||||    
T  36035310 actaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaagagctttagttacattttatagta 36035409  T
Q  293 ttat 296  Q
    ||||    
T  36035410 ttat 36035413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 5498495 - 5498577
Alignment:
Q  190 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagag 271  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||| |||  ||| |||||||||||||    
T  5498495 tgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaaaacctatgttactaaagag 5498577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 298
Target Start/End: Original strand, 35083000 - 35083102
Alignment:
Q  197 aaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagtatta 295  Q
    |||||||||||||||||| | | |||||||||||| |||| |||||||||||||| ||  ||||||||  || ||| |||||||||| ||| ||||||||    
T  35083000 aaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaaacccttgttagaaatgagctttagttacaatttatagtatta 35083099  T
Q  296 tct 298  Q
    |||    
T  35083100 tct 35083102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 27259524 - 27259474
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaatt 244  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  27259524 actaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 1613296 - 1613253
Alignment:
Q  190 tgtaactaaatcaagaaaaatgttactgattaaatttagtaaca 233  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  1613296 tgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 1613253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 2179959 - 2180053
Alignment:
Q  205 aaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagtattatct 298  Q
    |||||||||| ||||||||||||| | ||||| ||||||| || | | || ||| ||||||||||||| |||||||| ||||| |||| ||||||    
T  2179959 aaaaatgttaatgattaaatttagaatcatttgaacaattcttgggtaaattccctgttactaaagagctttagttatattttatagtgttatct 2180053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 27713507 - 27713463
Alignment:
Q  205 aaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||    
T  27713507 aaaaaagttactaattaaatttagtaacatttaaataattgttag 27713463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 26735681 - 26735758
Alignment:
Q  220 taaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagtattat 296  Q
    ||||||||||||||||| |||||||||||| | || ||| ||||||||||||| || | | ||||||  |||||||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttactaaagagcttcaataacatttcatagtattat 26735758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 27259468 - 27259428
Alignment:
Q  258 ttgttactaaagagatttagttacattttttagtattatct 298  Q
    |||||||||||||| ||||||||||||||  ||||||||||    
T  27259468 ttgttactaaagagctttagttacattttagagtattatct 27259428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 31342800 - 31342690
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| ||| || ||||||||||| | ||||||||||||||     
T  31342800 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacatttta 31342701  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  31342700 tagtactatct 31342690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 7718201 - 7718310
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||  | |||||||||||||| |||||| ||||||||||||| |||| |||||||||     
T  7718201 ttgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttactaaagagttttaattacatttta 7718300  T
Q  288 tagtattatc 297  Q
    ||||| ||||    
T  7718301 tagtactatc 7718310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 297
Target Start/End: Original strand, 30266982 - 30267128
Alignment:
Q  159 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 251  Q
    ||||| ||||| |||||||||||||||||||||       ||||||||||||||||||||||| | ||||||||||||||||  | |||||||||||| |    
T  30266982 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggt 30267081  T
Q  252 -aagtccttgttactaaagagatttagttacattttttagtattatc 297  Q
     ||| || |||||| |||||| |||||||||||||| ||||| ||||    
T  30267082 aaagcccgtgttaccaaagagttttagttacattttatagtactatc 30267128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 44920943 - 44921082
Alignment:
Q  165 tacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtc 256  Q
    ||||| |||||||||||||||||||||       |||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||| | |||      
T  44920943 tacaataatgacatttagtaacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagct 44921041  T
Q  257 cttgttactaaagagatttagttacattttttagtattatc 297  Q
    | ||||||||||||| |||||||||||||| ||||| ||||    
T  44921042 cgtgttactaaagagttttagttacattttatagtactatc 44921082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 41573410 - 41573469
Alignment:
Q  190 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 249  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  41573410 tgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttag 41573469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 15513683 - 15513793
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||| |||||||||||||||||||||  |||||||| |||||| || |||||||||||| | |||  | |||||||||| |||||||||||||||||     
T  15513683 ttgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaaaagatttagttacatttta 15513782  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  15513783 tagtactatct 15513793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 24479173 - 24479279
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagta 292  Q
    |||||||||||| || ||||||| ||||||||||||||||||| ||||||| |||| | |||  | ||||||||||||| |||||||| ||||| |||||    
T  24479173 actaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaagctcgtgttactaaagagctttagttatattttatagta 24479272  T
Q  293 ttatcta 299  Q
    |||||||    
T  24479273 ttatcta 24479279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 40016614 - 40016718
Alignment:
Q  196 taaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagaga-tttagttacattttttagtat 293  Q
    ||||||||| ||||||||||||||||||||||||||||||| || ||||||||| | ||| || | |||||||||||| |||| ||||||||| | ||||    
T  40016614 taaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaagaccctattactaaagagattttaattacattttattgtat 40016713  T
Q  294 tatct 298  Q
    |||||    
T  40016714 tatct 40016718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 7702450 - 7702555
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataa-gtccttgttactaaagagatttagttacattttttagta 292  Q
    ||||||| || |||||||||| | |||||| ||||||||||||  ||||||||||| ||| | || | ||||||||||| |||||||||||||| |||||    
T  7702450 actaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaagcccatattactaaagagctttagttacattttgtagta 7702549  T
Q  293 ttatct 298  Q
    ||||||    
T  7702550 ttatct 7702555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 11017478 - 11017582
Alignment:
Q  194 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagta 292  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||| | |||||||||| | |||||| |||||||||| || || ||| ||| ||| |||||    
T  11017478 actaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagtccgtgttactaaaaagcttcagtaacactttatagta 11017577  T
Q  293 ttatc 297  Q
    |||||    
T  11017578 ttatc 11017582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 22966558 - 22966651
Alignment:
Q  206 aaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagtattatct 298  Q
    ||||| ||||| || ||||||||| ||||||||||||||||||| | ||| || ||||||||||||  ||||||||||||||  ||||||||||    
T  22966558 aaaatattactaatgaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagacctttagttacattttagagtattatct 22966651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 6715 - 6825
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| |  ||||||||||  | ||||||||||||||     
T  6715 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttttagttacatttta 6814  T
Q  288 tagtattatct 298  Q
    ||||| |||||    
T  6815 tagtactatct 6825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 446367 - 446263
Alignment:
Q  189 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtta-gataagtccttgttactaaagagatttagttacattttt 287  Q
    ||||||||||||||   ||| ||||||  ||||||||| ||||||||| ||||||||||| || |||||| | ||||||||||| |||||| ||| |||     
T  446367 ttgtaactaaatcatacaaattgttaccaattaaatttggtaacatttgaacaattgttaggaaaagtccatattactaaagagctttagtaacacttta 446268  T
Q  288 tagta 292  Q
    |||||    
T  446267 tagta 446263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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