View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1583_low_39 (Length: 297)

Name: NF1583_low_39
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1583_low_39
NF1583_low_39
[»] chr6 (2 HSPs)
chr6 (27-297)||(2844191-2844458)
chr6 (251-297)||(30775347-30775393)
[»] chr4 (6 HSPs)
chr4 (225-297)||(779865-779937)
chr4 (227-295)||(5415149-5415217)
chr4 (225-295)||(23559985-23560055)
chr4 (227-297)||(52327064-52327134)
chr4 (227-296)||(41377438-41377507)
chr4 (225-297)||(55875897-55875969)
[»] chr3 (8 HSPs)
chr3 (225-297)||(36177269-36177341)
chr3 (226-297)||(15877729-15877800)
chr3 (223-295)||(52313852-52313924)
chr3 (251-297)||(35424129-35424175)
chr3 (225-293)||(7352597-7352665)
chr3 (227-295)||(53464266-53464334)
chr3 (243-297)||(35496096-35496150)
chr3 (241-297)||(1995563-1995619)
[»] chr5 (5 HSPs)
chr5 (225-287)||(4924777-4924839)
chr5 (227-297)||(39060169-39060239)
chr5 (226-295)||(35211968-35212037)
chr5 (227-293)||(34769628-34769694)
chr5 (227-268)||(37902469-37902510)
[»] chr1 (4 HSPs)
chr1 (227-297)||(23571062-23571132)
chr1 (225-293)||(43496368-43496436)
chr1 (224-269)||(7386288-7386333)
chr1 (260-297)||(47394377-47394414)
[»] chr8 (5 HSPs)
chr8 (225-293)||(18227059-18227127)
chr8 (229-295)||(11425461-11425527)
chr8 (225-297)||(1156328-1156400)
chr8 (228-295)||(40279022-40279089)
chr8 (225-294)||(35158843-35158912)
[»] chr7 (4 HSPs)
chr7 (227-295)||(44396445-44396513)
chr7 (227-297)||(49080738-49080808)
chr7 (225-297)||(32485428-32485500)
chr7 (225-297)||(48252943-48253015)
[»] chr2 (5 HSPs)
chr2 (228-297)||(6858965-6859034)
chr2 (224-297)||(39375763-39375836)
chr2 (238-295)||(18565797-18565854)
chr2 (225-270)||(33386644-33386689)
chr2 (227-292)||(37069962-37070027)
[»] scaffold0110 (2 HSPs)
scaffold0110 (225-292)||(13771-13838)
scaffold0110 (225-292)||(21508-21575)
[»] scaffold0015 (1 HSPs)
scaffold0015 (227-295)||(56645-56713)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 27 - 297
Target Start/End: Complemental strand, 2844458 - 2844191
Alignment:
Q  27 agaatcatcctttagcatttgtattcttctatcgggtaacatcgctagagtataaattaaacaattaatgtcaaatttgcgtaaacaagtaatataatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2844458 agaatcatcctttagcatttgtattcttctatcgggtaacatcgctagagtataaattaaacaattaatgtcaaatttgcgtaaacaagtaatataatat 2844359  T
Q  127 -aggcaannnnnnngtttattcatatacaaaagatcggtagagtagagttatccatctcacaatagctttcaccaagtatggccattatatatagcccat 225  Q
     ||||||       |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2844358 taggcaaattttttgtttgtacatataccaaagatcggtagagtagagttatccatctcacaatagctttcaccaagtatggccattatatatagcccat 2844259  T
Q  226 tagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
       |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  2844258 ---agcaaccaca-tcatgccaccgatatgggtggtataaatgagtttcacataatacattatattacttca 2844191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 30775347 - 30775393
Alignment:
Q  251 atatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||| ||||||||||||||||   |||||||||||||||||||||||    
T  30775347 atataggtggtataaatgggtcctacataatacattatattacttca 30775393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 779865 - 779937
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||||| |||||| ||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  779865 ttagagcacccacatccataccacccatatgggtggtataaatgggtctcacataatacattatattacttca 779937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 5415149 - 5415217
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    ||||||||||||| ||||||||| | |||| ||||||||||||| |  |||||||| ||||||||||||    
T  5415149 agagcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactt 5415217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 23559985 - 23560055
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    |||||||| |||||| ||||||||| | ||||||||||||||||||    |||||||| |||| |||||||    
T  23559985 ttagagcacccacatccatgccacccaaatgggtggtataaatgggacccacataatatattacattactt 23560055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 52327134 - 52327064
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||| |||||| ||||||||| ||||| || ||||||||||||   ||||||||  |||||||||||||    
T  52327134 agagcagccacatccatgccacccatatgagtagtataaatgggtcccacataatattttatattacttca 52327064  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 41377507 - 41377438
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttc 296  Q
    |||||| |||| | |||| |||| |||||| | |||||||||||| | |||||||| |||||||||||||    
T  41377507 agagcatccacttccatgtcacctatatggatagtataaatgggtcttacataatatattatattacttc 41377438  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 55875969 - 55875897
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||||| |||||| ||| ||||| || || || ||||||||||||   |||||||| ||||||||||||||    
T  55875969 ttagagcatccacatccataccacccatgtgtgtagtataaatgggtcccacataataaattatattacttca 55875897  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 36177341 - 36177269
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||| ||| |||||||||||||||| |||||| ||||||||||||||   |||||||| ||||||||||||||    
T  36177341 ttagggcatccacattcatgccacctatatggatggtataaatgggtcccacataatagattatattacttca 36177269  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 15877729 - 15877800
Alignment:
Q  226 tagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    ||||||| || ||| ||| ||||| |||||||||||||||||||||   |||||||||||||||||||||||    
T  15877729 tagagcacccccatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttca 15877800  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 52313852 - 52313924
Alignment:
Q  223 cattagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    |||||||||| |||||| ||||||||| | ||||||||||||||||||    ||||| |||||||||||||||    
T  52313852 cattagagcacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactt 52313924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 35424129 - 35424175
Alignment:
Q  251 atatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||||    
T  35424129 atatgagtggtataaatgggtctcacataatacattatattacttca 35424175  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 7352665 - 7352597
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattac 293  Q
    |||||||| |||||| |||| |||| || ||||||||||||| ||||   |||||||||||||||||||    
T  7352665 ttagagcatccacatccatgtcacccatttgggtggtataaacgggtcccacataatacattatattac 7352597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 53464266 - 53464334
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    |||||| |||||| ||||||||| | ||||||||||||||||||    ||||| |||||||||||||||    
T  53464266 agagcacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactt 53464334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 35496096 - 35496150
Alignment:
Q  243 tgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    ||||||| ||||| |||||||||||||||   |||||||| ||||||||||||||    
T  35496096 tgccacctatatgagtggtataaatgggtcctacataatatattatattacttca 35496150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 1995563 - 1995619
Alignment:
Q  241 catgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||| |||| ||| || ||||||||||||||   |||||||||||||||||||||||    
T  1995563 catgtcacccatacggatggtataaatgggtcccacataatacattatattacttca 1995619  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 4924777 - 4924839
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacatta 287  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| ||   |||||||||||||    
T  4924777 ttagagcaaccacatccatgccacccatatgggtggtataaatgagtcccacataatacatta 4924839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 39060169 - 39060239
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||| |||||| |||  |||| |||||||||||||||||||||   |||||||||||||||||||||||    
T  39060169 agagcacccacatacatatcacctatatgggtggtataaatgggtcccacataatacattatattacttca 39060239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 35212037 - 35211968
Alignment:
Q  226 tagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    ||||||| |||||||||||||||| | || ||||||||||||||||   ||||| || ||||||||||||    
T  35212037 tagagcatccacattcatgccacccaaataggtggtataaatgggtcccacatattatattatattactt 35211968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 34769694 - 34769628
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattac 293  Q
    |||||| |||||| ||||||| | || ||||||||||||| ||||   |||||||||||||||||||    
T  34769694 agagcatccacatccatgccatccatttgggtggtataaacgggtcccacataatacattatattac 34769628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 37902510 - 37902469
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatg 268  Q
    ||||||||||||| ||||||||| |||| |||||||||||||    
T  37902510 agagcaaccacatccatgccacccatattggtggtataaatg 37902469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 23571132 - 23571062
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||| || ||| ||| ||||| |||||||||||||||||||||   |||||||||||||||||||||||    
T  23571132 agagcacccgcatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttca 23571062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 43496368 - 43496436
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattac 293  Q
    |||||||| |||||| ||||||||| || ||| ||||||||| ||||   |||||||||||||||||||    
T  43496368 ttagagcatccacatccatgccacccatttggatggtataaacgggtcccacataatacattatattac 43496436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 7386288 - 7386333
Alignment:
Q  224 attagagcaaccacattcatgccaccgatatgggtggtataaatgg 269  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||    
T  7386288 attagagcaaccacattcatgtcatttatatgggtggtataaatgg 7386333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 47394377 - 47394414
Alignment:
Q  260 gtataaatgggtttgacataatacattatattacttca 297  Q
    |||||||||||||  |||||||||||||||||||||||    
T  47394377 gtataaatgggttccacataatacattatattacttca 47394414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 18227127 - 18227059
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattac 293  Q
    |||||||| |||||| ||||||||| || ||||||||||||| ||||   |||||||||||||||||||    
T  18227127 ttagagcatccacatccatgccacccatttgggtggtataaacgggtcccacataatacattatattac 18227059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 11425461 - 11425527
Alignment:
Q  229 agcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    ||||||||||| ||||||||| | |||| ||||||||||||| |  |||||||| ||||||||||||    
T  11425461 agcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactt 11425527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 1156400 - 1156328
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||||| |||||| ||| ||||| ||||| ||||||||||||||| | || ||||||| ||||||| ||||    
T  1156400 ttagagcatccacatccataccacccatatgagtggtataaatgggtctcacgtaatacaatatattatttca 1156328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 40279089 - 40279022
Alignment:
Q  228 gagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    ||||| |||||||||||||||| | ||| ||||||||||||||    |||||||| ||||||||||||    
T  40279089 gagcacccacattcatgccacccaaatgagtggtataaatgggacccacataatatattatattactt 40279022  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 35158843 - 35158912
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattact 294  Q
    |||||||| |||||| |||  |||  |||||||||||||||||| || |||| ||||| |||||||||||    
T  35158843 ttagagcatccacatccatatcactcatatgggtggtataaatgagtctgacttaatatattatattact 35158912  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 44396513 - 44396445
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    ||||||||||||| ||||||||| | |||| ||||||||||||| |  |||||||| ||||||||||||    
T  44396513 agagcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactt 44396445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 49080738 - 49080808
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||| |||||| |||| || | ||||| || |||||||||||| | |||||||| ||||||||||||||    
T  49080738 agagcacccacatccatgtcatccatatgagttgtataaatgggtcttacataatatattatattacttca 49080808  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 32485428 - 32485500
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||| | |||||| ||| ||||  |||| |||||||| |||||||   |||||||||||||||||||||||    
T  32485428 ttagagtagccacatccataccactcatatcggtggtatcaatgggtcccacataatacattatattacttca 32485500  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 48253015 - 48252943
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||||| |||||| ||||||||| ||||| || ||||||||||||   | ||||||  |||||||||||||    
T  48253015 ttagagcacccacatccatgccacccatatgagtagtataaatgggtcccatataatattttatattacttca 48252943  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 6858965 - 6859034
Alignment:
Q  228 gagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    ||||| |||||| ||| ||||| |||||||||||||||||||||   || ||||||| ||||||||||||    
T  6858965 gagcatccacatccataccacccatatgggtggtataaatgggtcccacgtaatacaatatattacttca 6859034  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 39375836 - 39375763
Alignment:
Q  224 attagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattacttca 297  Q
    |||||||||||||||| ||||||| | |||||| || |||||||| || | | |||||| ||||||||||||||    
T  39375836 attagagcaaccacatacatgccatccatatggatgatataaatgagtctcatataatatattatattacttca 39375763  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 18565854 - 18565797
Alignment:
Q  238 attcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    ||||||| || | ||||| ||||||||||||||| | | |||||||||||||||||||    
T  18565854 attcatgtcatccatatgagtggtataaatgggtctcatataatacattatattactt 18565797  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 33386644 - 33386689
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatggg 270  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||||||    
T  33386644 ttagagcaaccacatccatgccacccaaatgagtggtataaatggg 33386689  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 37070027 - 37069962
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatatta 292  Q
    |||||| |||||| ||||||||| || ||||||||||||||||||   |||||||| | |||||||    
T  37070027 agagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatatta 37069962  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 13771 - 13838
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatatta 292  Q
    |||||||| |||||| ||||||||| || ||||||||||||||||||   |||||||| | |||||||    
T  13771 ttagagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatatta 13838  T

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Target: scaffold0110; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 21508 - 21575
Alignment:
Q  225 ttagagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatatta 292  Q
    |||||||| |||||| ||||||||| || ||||||||||||||||||   |||||||| | |||||||    
T  21508 ttagagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatatta 21575  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 56713 - 56645
Alignment:
Q  227 agagcaaccacattcatgccaccgatatgggtggtataaatgggtttgacataatacattatattactt 295  Q
    ||||||||||||| ||||||| | | |||| |||||||||||||    |||||||| ||||||||||||    
T  56713 agagcaaccacatccatgccatccaaatggatggtataaatgggacccacataatatattatattactt 56645  T

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