View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_41 (Length: 292)
Name: NF1583_low_41
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 40893505 - 40893241
Alignment:
| Q |
8 |
gagcagagatggcttagggggcaacaataatgtaggagatcatacacaaacaaaagcgttggaacataaatttttcaacaaaataaaccagtcaagtttc |
107 |
Q |
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| T |
40893505 |
gagcagtgatggcttagggggcaacaataatgtaggagatcatacacgaacaaaagcgttggaacataaatttttcaacaaaataaaccagtcaagtttc |
40893406 |
T |
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| Q |
108 |
aaaagcaacaaaaccaaaatattattcaacaacatttcatcattgacaaatcaagtacaaatctcatgggatttcacatcacaactcttcctcaagtgat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40893405 |
aaaagcaacaaaaccaaaatattattcaacaacatttcatcattgacaaatcaagtacaaatatcatgggatttcacatcacaactcttcctcaagtgat |
40893306 |
T |
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| Q |
208 |
ttcactaaattaaattaatttgttagaatacttcaatttgccagatagtatcatctaaccttgatacatg |
277 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40893305 |
ttcactaaa-----ttaatttgttagaatacttcaatttgccagatagtatcatctaaccttgatacatg |
40893241 |
T |
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