View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_44 (Length: 286)
Name: NF1583_low_44
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_44 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 33723534 - 33723250
Alignment:
| Q |
2 |
catcaatcaaaacttttgtacactgaccgtgtatataaattaaactcttccaaaatattatgtgatttgacagactaaaagatgttcaatggatgtcagt |
101 |
Q |
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| T |
33723534 |
catcaattaaaacttttgtacactgacgatgtatataaattaaactctttcaaaatattatgtgatttgacagactaaaagatgttcaatggatgtcagt |
33723435 |
T |
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| Q |
102 |
cagtataaaactattttacactaacaatgcatcttcagtcttctctacaactacttttccttttgctctaaccatacccgcaaattaaacttaaaccgca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33723434 |
cagtataaaactattttacactaacaatgcatcttcagtcttctctacaactacttttcctttcgctctaaccatacccgcaaattaaacttaaaccgca |
33723335 |
T |
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| Q |
202 |
agcaattaaaatccccattatccctttacactagcaacttatatctccttcccataacactacatcatcaatttgatttttaacc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33723334 |
agcaattaaaatccccattatccctttacactagcaacttatatctccttcccataacactacatcatcaatttgatttttaacc |
33723250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 29448098 - 29448059
Alignment:
| Q |
10 |
aaaacttttgtacactgaccgtgtatataaattaaactct |
49 |
Q |
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| T |
29448098 |
aaaacttttatacactgaccctgtatataaattaaactct |
29448059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 1018612 - 1018649
Alignment:
| Q |
10 |
aaaacttttgtacactgaccgtgtatataaattaaact |
47 |
Q |
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| T |
1018612 |
aaaacatttgtacactgacagtgtatataaattaaact |
1018649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 9477612 - 9477572
Alignment:
| Q |
10 |
aaaacttttgtacactgaccgtgtatataaattaaactctt |
50 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| |
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| T |
9477612 |
aaaacttttgtacattgacaatgtatataaattaaactctt |
9477572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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