View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_46 (Length: 283)
Name: NF1583_low_46
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_46 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 32 - 283
Target Start/End: Complemental strand, 49424246 - 49423995
Alignment:
| Q |
32 |
taaccgatctagacacagagaattcatcaaaggaatttatgtaaattagttggaattatatttttaaagactactaaattactaatcataaactaaggga |
131 |
Q |
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| T |
49424246 |
taaccgatctagacacagagaattcatcaaaggaatttatgtaaattagttggaattatatttttaaagactactaaattactaatcataaactaaggga |
49424147 |
T |
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| Q |
132 |
atcatcatgaatagacttcaaatcaaaagatgaatctagcaaggctcgtggttctggtgcaacttggagggcgcttacggagacttccgttccatggtgg |
231 |
Q |
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| T |
49424146 |
atcatcatgaatagacttcaaatcaaaagatgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtgg |
49424047 |
T |
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| Q |
232 |
tttcatgaatggagtgattatccagattactaatgacaggtttgtatcaact |
283 |
Q |
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| T |
49424046 |
tttcatgaatggagcgattatccagattactaatgacaggtttgtatcaact |
49423995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 49416533 - 49416654
Alignment:
| Q |
162 |
tgaatctagcaaggctcgtggttctggtgcaacttggagggcgcttacggagacttccgttccatggtggtttcatgaatggagtgattatccagattac |
261 |
Q |
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| T |
49416533 |
tgaatctagtaaggctgatggatttggtgcagcttggatgacacttacagagacttccgcttcgtggtggtttcatgaacggagtgattatccagattac |
49416632 |
T |
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| Q |
262 |
taatgacaggtttgtatcaact |
283 |
Q |
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| T |
49416633 |
cattgatacgtttgtatcaact |
49416654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49424329 - 49424280
Alignment:
| Q |
1 |
ttttaattttaaaattgtcaccagagtgaagtaaccgatctagacacaga |
50 |
Q |
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| T |
49424329 |
ttttaattttaaaattgtcaccagtgtgaaataaccgatctagacacaga |
49424280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 43362976 - 43363025
Alignment:
| Q |
220 |
gttccatggtggtttcatgaatggagtgat--tatccagattactaatga |
267 |
Q |
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| T |
43362976 |
gttccatggtggtttcatgaaagaagtgattatatccagattactaatga |
43363025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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