View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_57 (Length: 247)
Name: NF1583_low_57
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 48229195 - 48229416
Alignment:
| Q |
11 |
ataattcttgaaacatacctaaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagaga---tttaacagatg |
107 |
Q |
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| T |
48229195 |
ataattcttgaaacatacctaaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagagaagttttaacagatg |
48229294 |
T |
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| Q |
108 |
aatcaaaataaagttatatgatattgaattctataaagacaattaagtattttcctaatgcatgcacgacgtgtagaataaatttttctaaattaaaatt |
207 |
Q |
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| T |
48229295 |
aatcaaaataaagttatatgatattgaattctataaaaacaattaagtattttcctaatgcatgcacgatgtgtagaataaatttttctaaattaaaatt |
48229394 |
T |
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| Q |
208 |
gttataatattatgttttattt |
229 |
Q |
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| T |
48229395 |
gttataatattatgttttattt |
48229416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 166
Target Start/End: Original strand, 27953756 - 27953878
Alignment:
| Q |
46 |
ttatgatcttgacggtgaaattatatttgaataattaaaagtcattagaga---tttaacagatgaatcaaaataaagttatatgatattgaattctata |
142 |
Q |
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| T |
27953756 |
ttatgatct-gatggtgaaattttatttgaagaattgaaagtcagtggagaagttttataagttgaatcaaaataaaattatgtgatattatattcttta |
27953854 |
T |
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| Q |
143 |
aagacaattaagtattttcctaat |
166 |
Q |
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| T |
27953855 |
atgacatttaaatgttttcctaat |
27953878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 31781783 - 31781864
Alignment:
| Q |
15 |
ttcttgaaacatacctaaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagaga |
96 |
Q |
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| T |
31781783 |
ttcttgaaacatacttaaaacatgatgatttttatgatcttgatggtgaaattttatttgaagaattaaaattcattagaga |
31781864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 15857360 - 15857421
Alignment:
| Q |
30 |
taaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcatt |
91 |
Q |
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| T |
15857360 |
taaaacacaatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcatt |
15857421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 37864681 - 37864841
Alignment:
| Q |
16 |
tcttgaaacatacctaaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagag---atttaacagatgaatca |
112 |
Q |
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| T |
37864681 |
tcttgaaacttatttaaaacatggtaattcatatgatcttcatggtgaaattcaatttgaagaattaaaagtcattagagtgattttaacaattgaatca |
37864780 |
T |
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| Q |
113 |
aaataaagttatatgatattgaattctataaagacaattaagtattttcctaatgcatgca |
173 |
Q |
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| T |
37864781 |
aaatcaagtttgatgatattgagttctgttcgaacatttaattgttttcctaatgcatgca |
37864841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 9435575 - 9435702
Alignment:
| Q |
49 |
tgatcttgacggtgaaattatatttgaataattaaaagtcattagaga---tttaacagatgaatc-aaaataaagttatatgatattgaattctataaa |
144 |
Q |
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| T |
9435575 |
tgatcttgatggtgaaattttatttaaagaattaaaagtcattagagaagttttaacggttgaatcaaaaagcaaattatatgatattgagttctttaat |
9435674 |
T |
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| Q |
145 |
gacaattaagtattttcctaatgcatgc |
172 |
Q |
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| T |
9435675 |
tatgtttaattgttttcctaatgcatgc |
9435702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 31603773 - 31603679
Alignment:
| Q |
46 |
ttatgatcttgacggtgaaattatatttgaataattaaaagtcattagaga---tttaacagatgaatcaaaataaagttatatgatattgaatt |
137 |
Q |
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| T |
31603773 |
ttatgatcttgatggtgaaatttcattctaagaattaaaagtcatcagagaggttttaacaaattaatcaaaagcaaattatatgatattgaatt |
31603679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 34031822 - 34031776
Alignment:
| Q |
97 |
tttaacagatgaatcaaaataaagttatatgatattgaattctataa |
143 |
Q |
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| T |
34031822 |
tttaacagttcaatccaaataaagctatatgatattgaattctataa |
34031776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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