View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_63 (Length: 236)
Name: NF1583_low_63
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5512885 - 5512666
Alignment:
| Q |
1 |
aaaatttgatgtaaaattatgtatacgatnnnnnnntagaatttaaaatggtgtgaaaaatcgcttacttggcacaggttcattcattcctgggatgtga |
100 |
Q |
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| T |
5512885 |
aaaatttgatgtaaaattatgtatacgataaaaaaatagaatttaaaatggtgtgaaaaatcgcttacttggcacaggttcattcattcctgggatgtga |
5512786 |
T |
|
| Q |
101 |
acaaagaacaaaagaaatgttattaattaagaggccttatgtataagataaagnnnnnnnnnttaaatggtgcaaataattacttacttgttattcctct |
200 |
Q |
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| T |
5512785 |
acaaagaacaaaagaaatgttattaattaagaggccttatgtataagataaagaaaaaaaaattaaatggtgcaaataattacttacttgttattcctct |
5512686 |
T |
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| Q |
201 |
agctgcaacaataaataggg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
5512685 |
agctgcaacaataaataggg |
5512666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 5455479 - 5455661
Alignment:
| Q |
37 |
tagaatttaaaatggtgtgaaaaatcgcttacttggcacaggttcattcattcctgggatgtgaacaaagaacaaaagaaatgttattaattaagaggcc |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5455479 |
tagaatttaaaatggtgtgaaaaatcgcttacttggcacaggttcattcattcctgggatgtgaacaaagaacaaaagtaatgttattaattaagaggcc |
5455578 |
T |
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| Q |
137 |
ttatgtataagataaagnnnnnnnnnttaaatggtgcaaataattacttacttgttattcctctagctgcaacaataaataggg |
220 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5455579 |
ttatgtataagataaagaaaaataaattaaatggtgcaaataattacttacttgtta-tcctctagctgcaacaataaataggg |
5455661 |
T |
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