View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_65 (Length: 235)
Name: NF1583_low_65
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30359177 - 30358962
Alignment:
| Q |
1 |
caatccttttaaaaagtatacatatatatttattatttatataggagagnnnnnnnnnnnnnnngtgtgtgtgaagcttaattaatttcatataaaacaa |
100 |
Q |
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| T |
30359177 |
caatccttttaaaaagtatacatatatatttattatttatacatgagagttttttttttt-----tgtgtgggaagcttaattaatttcgtataaaacaa |
30359083 |
T |
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| Q |
101 |
aatagcttttaataaataatttaaaagctttctaaaggtaaatagatagagataacctggatatttgtgagtaaaggtatcccatatacttgttcctttg |
200 |
Q |
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| T |
30359082 |
agtagcttttaataaataatttaaaagcttcctaaaggtaaatagatagagataacctggatatttgtgagtaaaggtatcccatatacttgttcctttg |
30358983 |
T |
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| Q |
201 |
ccaccttcctttgcagaacct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
30358982 |
ccaccttcctttgcagaacct |
30358962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 24999271 - 24999217
Alignment:
| Q |
154 |
aacctggatatttgtgagtaaaggtatcccatatacttgttcctttgccaccttc |
208 |
Q |
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| T |
24999271 |
aacctgggtatttatgagtaaaggtatcccatatacttggtccttttccaccttc |
24999217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 7727801 - 7727761
Alignment:
| Q |
168 |
tgagtaaaggtatcccatatacttgttcctttgccaccttc |
208 |
Q |
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| T |
7727801 |
tgagtgaaggtatcccatatacttggccctttgccaccttc |
7727761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 42169465 - 42169534
Alignment:
| Q |
152 |
ataacctggatatttgtgagtaaaggtatcccatatacttgttcctttgccaccttcctttgcagaacct |
221 |
Q |
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||||||||| ||||| |||||| |||| ||||||||||||| |||| | |||||||| ||||||| |||| |
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| T |
42169465 |
ataacctgggtatttatgagtataggtgtcccatatacttgctcctctcccaccttcttttgcagcacct |
42169534 |
T |
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