View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_67 (Length: 227)
Name: NF1583_low_67
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_67 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32838957 - 32838731
Alignment:
| Q |
1 |
acgacatgtattgtgaaacagatggagtatatatttaacaattaagttgtacttacgagactatttaannnnnnnngtcaccgcataaaattcacacaag |
100 |
Q |
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| T |
32838957 |
acgacatgtattgtgaagcagatggagtatgtatttaacaattaagttgtacttacaagactaattagttttttttgtcaccgcataaaattcacacaag |
32838858 |
T |
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| Q |
101 |
taattggcgtgctcatattcaaaccggagtaatccaatctaacaatattgatattgtcggttgagttaagtcttataaaatataaagagaaatgctaaca |
200 |
Q |
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| T |
32838857 |
taattggcgtgctcatattcaaaccggagtaatccaatctaacaatattgatattgtcggttgagtcaagtcttataaaatataaagagaaatgctaata |
32838758 |
T |
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| Q |
201 |
attgcccttgttaagaaaattaaagaa |
227 |
Q |
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| T |
32838757 |
tttgcccttgttaagaaaattaaagaa |
32838731 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 36924859 - 36924819
Alignment:
| Q |
135 |
caatctaacaatattgatattgtcggttgagttaagtctta |
175 |
Q |
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| T |
36924859 |
caatctaacaatattaatattgtcggttgagttatgtctta |
36924819 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 7874668 - 7874631
Alignment:
| Q |
138 |
tctaacaatattgatattgtcggttgagttaagtctta |
175 |
Q |
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| T |
7874668 |
tctaacaatattgacattgtcggttgagctaagtctta |
7874631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 18598571 - 18598539
Alignment:
| Q |
2 |
cgacatgtattgtgaaacagatggagtatatat |
34 |
Q |
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| T |
18598571 |
cgacatgtattttgaaacagatggagtatatat |
18598539 |
T |
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