View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1583_low_7 (Length: 452)
Name: NF1583_low_7
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_7 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 14 - 452
Target Start/End: Original strand, 2382498 - 2382936
Alignment:
| Q |
14 |
aatacaaatatattatatcattttcaatgaatgcactttgggtgattaaaactttgaaataaacatgttaatttggacaagaaattcttccttatagttc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2382498 |
aatacaaatatattatatcattttcaatgaatgcactttgagtgattaaaactttgaaataaacatgttaatttggacaagaaattcttccttatagttc |
2382597 |
T |
|
| Q |
114 |
tgtctaattttttaagatggagtttcattttgatacaccgatggtgtaaagaatttttacagcgttagagaaccccgactaattacatgtttggctatag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
2382598 |
tgtctaattttttaagatggagtttcattttgatacaccgacggtgtaaagaatttttacagcgttagagaaccacgactaattacatgtttggctatgg |
2382697 |
T |
|
| Q |
214 |
aagtagttgtggataaaaccaaatattttgagtgatttgatgattatgattaattcacagtgaagattctttttggccggcagtgtataagaatcaaatc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2382698 |
aagtagttgtggataaaaccaaatattttgagtgatttgatgattatgattaattcacagtgaagattctttttggccggcagtgtataagaatcaaatc |
2382797 |
T |
|
| Q |
314 |
cttttaaagattattgattcagccttaaaatcttgattttgatgattatttgtggtgatgattagataaagctttttaatttagttctaatgcgcgttaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2382798 |
cttttaaagattattgattcagccttaaaatcttgattttgaacattatttgtggtgatgattagataaagctttttaatttagttctaatgcgcgttaa |
2382897 |
T |
|
| Q |
414 |
ttgtaatatgtttgaattgctggtgagtttgataaaatt |
452 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2382898 |
ttgtaacgtgtttgaattgctggtgagtttgataaaatt |
2382936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University