View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_71 (Length: 218)
Name: NF1583_low_71
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_71 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 25274121 - 25274310
Alignment:
| Q |
13 |
cataggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggta |
112 |
Q |
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| T |
25274121 |
cataggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggta |
25274220 |
T |
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| Q |
113 |
tcttctttattgttcagcattgtagaaaacactacttcttcaagaggaggaaaagatgggtggatttctgatgatattaacaagggtcatttt |
205 |
Q |
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| T |
25274221 |
tcttctttattgttcagcattgtagaaaacacta---cttcaagaggaggaaaagatgggtggatttctgatgatataaacaagggtcatttt |
25274310 |
T |
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Target: scaffold0236 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 23607 - 23418
Alignment:
| Q |
13 |
cataggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggta |
112 |
Q |
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| T |
23607 |
cataggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgctgcttcgctttctggattgggaatggctgcaggaagcttggta |
23508 |
T |
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| Q |
113 |
tcttctttattgttcagcattgtagaaaacactacttcttcaagaggaggaaaagatgggtggatttctgatgatattaacaagggtcatttt |
205 |
Q |
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| T |
23507 |
tcttctttattgttcagcattgtagaaaacacta---cttcaagaggaggaaaagatgggtggatttctgatgatataaacaagggtcatttt |
23418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 43687190 - 43687374
Alignment:
| Q |
17 |
ggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggtatctt |
116 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||| | || | ||||||||||||| ||||||||| |||| ||||||||||| |
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| T |
43687190 |
ggccaaaatgagttttattacaaagagtttccaaagactatgtctagtgtttcttctgcactttctggattggcaatggctgccggaaacttggtatctt |
43687289 |
T |
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| Q |
117 |
ctttattgttcagcattgtagaaaacactacttcttcaagaggaggaaaagatgggtggatttctgatgatattaacaagggtcattt |
204 |
Q |
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| T |
43687290 |
cttttgtattcagtacgattgaaaacacta---cttcaagtggaggaaatgaagggtggatttctgataatattaacaagggtcattt |
43687374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 43728753 - 43728933
Alignment:
| Q |
17 |
ggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggtatctt |
116 |
Q |
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| T |
43728753 |
ggccaaaatgaattctattacaaagagtttccgaggactatgtctagtatttctgcttccctttgtggattgggaatggctgcaggaaacttggtatctt |
43728852 |
T |
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| Q |
117 |
ctttattgttcagcattgtagaaaacactacttcttcaagaggaggaaaagatgggtggatttctgatgatattaacaagggtc |
200 |
Q |
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| T |
43728853 |
cttttgtattcaacactatagaaaacgtta---cttcgagaggaggaaaagaagggtggatttctgataatattaacaagggtc |
43728933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 43704048 - 43704232
Alignment:
| Q |
17 |
ggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggtatctt |
116 |
Q |
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||||| |||||||||||||||| ||||||||||| | |||||||||||| || ||||| ||||||||||||| ||||| || ||||| ||||||||| | |
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| T |
43704048 |
ggccagaatgagttttattacaaagagtttccaaagagtatgtctagtgttgctgcttccctttctggattggcaatgggtgtaggaaacttggtatcct |
43704147 |
T |
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| Q |
117 |
ctttattgttcagcattgtagaaaacactacttcttcaagaggaggaaaagatgggtggatttctgatgatattaacaagggtcattt |
204 |
Q |
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||||| | || |||||| |||||| ||||| || |||| |||||||| || |||||| |||||||| |||||||||| |||||||| |
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| T |
43704148 |
ctttagtattgagcattatagaaagcacta---ctccaagtggaggaaatgaagggtgggtttctgataatattaacaaaggtcattt |
43704232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 43715019 - 43715203
Alignment:
| Q |
17 |
ggccaaaatgagttttattacacagagtttccaagtactatgtctagtgtcgccgcttcgctttctggattgggaatggctgcaggaagcttggtatctt |
116 |
Q |
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||||| |||||||||||||||| ||||||||||| | |||||||||||| || ||||| ||||||||||||| ||||| || ||||| ||||||||| | |
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| T |
43715019 |
ggccagaatgagttttattacaaagagtttccaaagagtatgtctagtgttgctgcttccctttctggattggcaatgggtgtaggaaacttggtatcct |
43715118 |
T |
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| Q |
117 |
ctttattgttcagcattgtagaaaacactacttcttcaagaggaggaaaagatgggtggatttctgatgatattaacaagggtcattt |
204 |
Q |
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| T |
43715119 |
ctttagtattgagcattatagaaagcacta---ctccaagtggaggaaatgaagggtgggtttctgataatattaacaaaggtcattt |
43715203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 2690922 - 2690970
Alignment:
| Q |
152 |
tcaagaggaggaaaagatgggtggatttctgatgatattaacaagggtc |
200 |
Q |
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| T |
2690922 |
tcaagtggtggaaaagatggatggatttcggataatattaacaagggtc |
2690970 |
T |
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