View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583_low_9 (Length: 431)
Name: NF1583_low_9
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 27163232 - 27163635
Alignment:
| Q |
20 |
tttatctctcgcaagtttctctaagaatcttcatagcgatattcttannnnnnn-ggctcaattgtgtgtagattatctgaaaagatattaacatgagaa |
118 |
Q |
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| T |
27163232 |
tttatctctcacaagtttctctaagaatcttcagagagatattcttgttttttttggctcagttgtgtgtagattatctgaaaagatattaacatgagaa |
27163331 |
T |
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| Q |
119 |
tttttcagcacaaaaaggaaaatagacaaatattatgtgataaaattaagcttaaattattttgatggttaaaagcggcatatacaacttttcattgttt |
218 |
Q |
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| T |
27163332 |
tttttcagcacaaaaaggaaaatagacaaatattatgtgataaaattaagcttaaattattttgatggttaaaagcggcatatacaacttttcattgttt |
27163431 |
T |
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| Q |
219 |
gacctttaatatttgtttctagtacatcttgtgttgaaagaacttgtttcgtgtaattatttttatatatttaattttggtgtttt-nnnnnnntgtaat |
317 |
Q |
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| T |
27163432 |
gacctttaatatttgtttctagtacattttgtgttgaaagaacttgtttcgtgtaattatttttatatatttgattttggtgttttaaaaaaaatgtaat |
27163531 |
T |
|
| Q |
318 |
tcttttttataagcgactataaaggataaatttgtcaaaacataatctataatgacaattgttcgatagaatttcgcttttccttctacgctgataactt |
417 |
Q |
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| T |
27163532 |
tcttttttataagcgactataaagggtaaatttgtcaaaacataatctataatgaaaattgttcgatagaatttcgcttttccttccatgctgataactt |
27163631 |
T |
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| Q |
418 |
cttc |
421 |
Q |
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|||| |
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| T |
27163632 |
cttc |
27163635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 204 - 304
Target Start/End: Original strand, 27172447 - 27172547
Alignment:
| Q |
204 |
aacttttcattgtttgacctttaatatttgtttctagtacatcttgtgttgaaagaacttgtttcgtgtaattatttttatatatttaattttggtgttt |
303 |
Q |
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| T |
27172447 |
aacttttcattgtttgacctttaatgtctgtttctagtacatcttgcgttgaaagaacttgtttcgtgtaattatttttatatatttgattttggtgttt |
27172546 |
T |
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| Q |
304 |
t |
304 |
Q |
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| T |
27172547 |
t |
27172547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 27172210 - 27172346
Alignment:
| Q |
74 |
ggctcaattgtgtgtagattatctgaaaagatattaacatgagaatttttcagcacaaaaaggaaaatagacaaatattatgtgataaaattaagcttaa |
173 |
Q |
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| T |
27172210 |
ggctcaattgtgtgtagattatctgaagagatagaagcaggagaattttttagcacaaagaagaaaacatgcaaatattatgtgataaaattaagcttca |
27172309 |
T |
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| Q |
174 |
attattttgatggttaaaagcggcatatacaactttt |
210 |
Q |
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| T |
27172310 |
attattttggtggttaaaagcggcatatccaactttt |
27172346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 27172605 - 27172686
Alignment:
| Q |
344 |
taaatttgtcaaaacataatctataatgacaattgtt----cgatagaatttcgcttttccttctacgctgataacttcttc |
421 |
Q |
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| T |
27172605 |
taaattagtcaaaacctaatctataattacaattgtttctccaatagaaatttgctttcccttccacactgataacttcttc |
27172686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 48706276 - 48706388
Alignment:
| Q |
81 |
ttgtgtgtagattatctgaaaagatattaacatgagaatttttcagcacaaaaaggaaaatagacaaatattatgtgataaaattaagcttaaattattt |
180 |
Q |
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|||||||| ||||||||||||||| | |||| | |||||||| | | |||| ||||||| | ||||| |||||||||||| || || || | |||||| |
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| T |
48706276 |
ttgtgtgtggattatctgaaaagaaagaaacaagcgaattttttatcgcaaagaggaaaacatgcaaatcttatgtgataaagtttaggttgatttattt |
48706375 |
T |
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| Q |
181 |
tgatggttaaaag |
193 |
Q |
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|| |||||||||| |
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| T |
48706376 |
tggtggttaaaag |
48706388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 41025313 - 41025369
Alignment:
| Q |
144 |
acaaatattatgtgataaaattaagcttaaattattttgatggttaaaagcggcata |
200 |
Q |
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| T |
41025313 |
acaaattttatgtgataaaattaagcttaagtcgttttggtggttgaaagtggcata |
41025369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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