View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1584-INSERTION-5 (Length: 744)

Name: NF1584-INSERTION-5
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1584-INSERTION-5
NF1584-INSERTION-5
[»] chr4 (6 HSPs)
chr4 (371-744)||(46890786-46891159)
chr4 (8-296)||(46890423-46890711)
chr4 (178-296)||(46873181-46873299)
chr4 (8-87)||(46873101-46873180)
chr4 (628-709)||(46873629-46873710)
chr4 (133-204)||(46899152-46899223)
[»] chr1 (2 HSPs)
chr1 (628-741)||(48232104-48232215)
chr1 (628-741)||(48237144-48237255)
[»] scaffold0055 (8 HSPs)
scaffold0055 (416-453)||(10677-10714)
scaffold0055 (416-453)||(18210-18247)
scaffold0055 (416-453)||(20439-20476)
scaffold0055 (416-453)||(23678-23715)
scaffold0055 (416-453)||(44760-44797)
scaffold0055 (416-453)||(57485-57522)
scaffold0055 (416-453)||(76176-76213)
scaffold0055 (416-449)||(29522-29555)
[»] scaffold0052 (7 HSPs)
scaffold0052 (416-453)||(8667-8704)
scaffold0052 (416-453)||(20682-20719)
scaffold0052 (416-453)||(40109-40146)
scaffold0052 (416-453)||(43079-43116)
scaffold0052 (416-453)||(55089-55126)
scaffold0052 (416-453)||(73821-73858)
scaffold0052 (416-449)||(66510-66543)
[»] scaffold0515 (1 HSPs)
scaffold0515 (407-451)||(10354-10398)
[»] scaffold0152 (3 HSPs)
scaffold0152 (407-451)||(17921-17965)
scaffold0152 (407-451)||(27974-28018)
scaffold0152 (407-451)||(36750-36794)
[»] chr3 (1 HSPs)
chr3 (133-204)||(19845978-19846049)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 371 - 744
Target Start/End: Original strand, 46890786 - 46891159
Alignment:
Q  371 tagatgttgttcagaatgtcattttctgtgatataatgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgcaactcggcttcaaattagag 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46890786 tagatgttgttcagaatgtcattttctgtgatataatgtgcaaatggaagaacgtgcgttgagttttgtggggaagtcgcaactcggcttcaaattagag 46890885  T
Q  471 tgtttgattaatggtttatgtgtgtcattttgttgtttgtattgtgcatgatgtttcatgtttggtttgacataaacttgctcctcctacttgttgtctc 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46890886 tgtttgattaatggtttatgtgtgtcattttgttgtttgtattgtgcatgatgtttcatgtttggtttgacataaacttgctcctcctacttgttgtccc 46890985  T
Q  571 tttgccttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcacatttctgccataa 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46890986 tttgccttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcaaatttctgccataa 46891085  T
Q  671 atgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactattatacccggcttgtttcc 744  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  46891086 atgggctgtggcatggcggactttgtgctagtggccatagtctataccatgactattatacccggcttgtttcc 46891159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 46890423 - 46890711
Alignment:
Q  8 caagaattattggaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttagggatgattccttgaaatcgaga 107  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46890423 caagaattattgcaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttagggatgattccttgaaattgaga 46890522  T
Q  108 gagtgctccgcaataaccattgaaactaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtcgca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890523 gagtgctccgcaataaccattgaaactaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtcgca 46890622  T
Q  208 attggaagcatacaggatattgttcctttggaatgaactgtctctttgctcatggtgaagaaggtaacaataactcattttgcttattg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890623 attggaagcatacaggatattgttcctttggaatgaactgtctctttgctcatggtgaagaaggtaacaataactcattttgcttattg 46890711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 46873181 - 46873299
Alignment:
Q  178 gcacttatcggaagactaagctgtgtcgcaattggaagcatacaggatattgttcctttggaatgaactgtctctttgctcatggtgaagaaggtaacaa 277  Q
    ||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||    
T  46873181 gcacttatcggaagactaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaa 46873280  T
Q  278 taactcattttgcttattg 296  Q
    |||||||||||| ||||||    
T  46873281 taactcattttgattattg 46873299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 46873101 - 46873180
Alignment:
Q  8 caagaattattggaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttaggg 87  Q
    |||||| ||||| ||||||||| ||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  46873101 caagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggg 46873180  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 628 - 709
Target Start/End: Original strand, 46873629 - 46873710
Alignment:
Q  628 ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccata 709  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |  || ||||||||| |||||||||| |||||| ||||    
T  46873629 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggtggactttgtgctagttggcata 46873710  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 46899152 - 46899223
Alignment:
Q  133 ctaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtc 204  Q
    |||| |||||||||||||  |||||| ||||||||| |||||||||  ||||| ||||||||||||||||||    
T  46899152 ctaacaatttggaaggcattagggctgtgaacaagccagcaaggagtgcttattggaagactaagctgtgtc 46899223  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 628 - 741
Target Start/End: Complemental strand, 48232215 - 48232104
Alignment:
Q  628 ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactatt 727  Q
    |||| |||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||||| |||  | |||||||  |||||||||||||    
T  48232215 ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtc--taccatgactatt 48232118  T
Q  728 atacccggcttgtt 741  Q
    ||||||||||||||    
T  48232117 atacccggcttgtt 48232104  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 628 - 741
Target Start/End: Complemental strand, 48237255 - 48237144
Alignment:
Q  628 ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactatt 727  Q
    |||| |||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||||| |||  | |||||||  |||||||||||||    
T  48237255 ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtc--taccatgactatt 48237158  T
Q  728 atacccggcttgtt 741  Q
    ||||||||||||||    
T  48237157 atacccggcttgtt 48237144  T

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Target: scaffold0055 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 10677 - 10714
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  10677 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 10714  T

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Target: scaffold0055; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 18210 - 18247
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  18210 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 18247  T

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Target: scaffold0055; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 20476 - 20439
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20476 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 20439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 23715 - 23678
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23715 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 23678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 44797 - 44760
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  44797 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 44760  T

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Target: scaffold0055; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 57522 - 57485
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  57522 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 57485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 76213 - 76176
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  76213 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 76176  T

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Target: scaffold0055; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 29522 - 29555
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcg 449  Q
    ||||||||||||||||| ||||||||||||||||    
T  29522 ggaagaacgtgcgttgagttttgtggggaagtcg 29555  T

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Target: scaffold0052 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 8704 - 8667
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8704 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 8667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 20719 - 20682
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20719 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 20682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 40109 - 40146
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  40109 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 40146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 43116 - 43079
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  43116 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 43079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 55126 - 55089
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  55126 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 55089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 73858 - 73821
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  73858 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 73821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 449
Target Start/End: Complemental strand, 66543 - 66510
Alignment:
Q  416 ggaagaacgtgcgttgatttttgtggggaagtcg 449  Q
    ||||||||||||||||| ||||||||||||||||    
T  66543 ggaagaacgtgcgttgagttttgtggggaagtcg 66510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 10354 - 10398
Alignment:
Q  407 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 451  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  10354 tgtgaaaatggaagaacgtgggttgagttttgtggggaagtcgca 10398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 17921 - 17965
Alignment:
Q  407 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 451  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  17921 tgtggaaatggaagaacgtgggttgagttttgtggggaagtcgca 17965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 27974 - 28018
Alignment:
Q  407 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 451  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  27974 tgtgaaaatggaagaacgtgggttgagttttgtggggaagtcgca 28018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 36750 - 36794
Alignment:
Q  407 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 451  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  36750 tgtgaaaatggaagaacgtgggttgagttttgtggggaagtcgca 36794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 19845978 - 19846049
Alignment:
Q  133 ctaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtc 204  Q
    |||||||||||||||| |  ||| || ||||||||| ||||||| |||||||  |||||| |||||||||||    
T  19845978 ctaataatttggaaggaaataggtctgtgaacaagccagcaaggggcacttactggaagattaagctgtgtc 19846049  T

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