View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1584-INSERTION-7 (Length: 706)

Name: NF1584-INSERTION-7
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1584-INSERTION-7
NF1584-INSERTION-7
[»] chr5 (34 HSPs)
chr5 (210-706)||(8643423-8643921)
chr5 (9-216)||(8643942-8644149)
chr5 (6-133)||(8677618-8677745)
chr5 (6-159)||(8636654-8636807)
chr5 (271-412)||(8677481-8677623)
chr5 (434-649)||(8636064-8636280)
chr5 (276-625)||(8527857-8528207)
chr5 (23-140)||(8535307-8535424)
chr5 (23-145)||(1600463-1600585)
chr5 (23-140)||(9074903-9075020)
chr5 (247-379)||(8636291-8636422)
chr5 (23-118)||(8548274-8548369)
chr5 (501-624)||(8640449-8640573)
chr5 (23-112)||(8528780-8528869)
chr5 (434-573)||(8677342-8677482)
chr5 (552-644)||(9002262-9002354)
chr5 (535-634)||(9075307-9075406)
chr5 (17-166)||(9003247-9003399)
chr5 (554-647)||(8420392-8420485)
chr5 (276-420)||(8534627-8534772)
chr5 (278-358)||(8640670-8640750)
chr5 (22-139)||(8641186-8641298)
chr5 (501-618)||(8534438-8534558)
chr5 (22-143)||(2905126-2905250)
chr5 (281-359)||(8548782-8548860)
chr5 (552-628)||(8549071-8549148)
chr5 (274-314)||(1601056-1601096)
chr5 (41-89)||(2845225-2845273)
chr5 (41-89)||(2857046-2857094)
chr5 (300-345)||(9075344-9075389)
chr5 (42-99)||(11354671-11354728)
chr5 (42-99)||(11372665-11372722)
chr5 (45-89)||(2874660-2874704)
chr5 (599-631)||(27458082-27458114)
[»] chr4 (2 HSPs)
chr4 (284-625)||(9442024-9442360)
chr4 (41-112)||(9442941-9443012)
[»] scaffold0627 (1 HSPs)
scaffold0627 (23-118)||(4488-4583)
[»] chr6 (1 HSPs)
chr6 (29-118)||(16716175-16716264)
[»] chr1 (4 HSPs)
chr1 (23-112)||(5130640-5130729)
chr1 (501-592)||(5129819-5129911)
chr1 (566-619)||(26324948-26325001)
chr1 (389-427)||(26324397-26324435)
[»] chr7 (7 HSPs)
chr7 (21-89)||(35779694-35779762)
chr7 (552-639)||(48362758-48362844)
chr7 (552-680)||(35777313-35777444)
chr7 (278-419)||(35777467-35777608)
chr7 (50-124)||(48362064-48362138)
chr7 (274-340)||(48362518-48362584)
chr7 (300-340)||(48362777-48362817)
[»] chr8 (1 HSPs)
chr8 (572-638)||(44438492-44438558)


Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 210 - 706
Target Start/End: Complemental strand, 8643921 - 8643423
Alignment:
Q  210 cttcctattttggtattttatttggagaaaggaaaacttgttaagtaataagtagtttttcaagattattccctaatattgttttaattgatataggtgt 309  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8643921 cttcctattttggcattttatttggagaaaggaaaacttgttaagtaataagtagtttttcaagattattccttaatattgttttaattgatataggtgt 8643822  T
Q  310 gcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttggaattacacgttcttcatcatcttatggtgactt 409  Q
    ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643821 gcaaatgtcaaattggaagaagaaaatgaagttctttccttgtcacaacaagttctttgagatttggaattacacgttcttcatcatcttatggtgactt 8643722  T
Q  410 gattaatatattttcctcagtctaatggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgac 509  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643721 gattaatatattttcctcagcctgatggtgaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgac 8643622  T
Q  510 ccttgcatactacaattttaggcacttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatg 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8643621 ccttgcatactacaattttaggcacttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaaaaaaatg 8643522  T
Q  610 aagatcttgaatgatgacttgacaagtaccctcctccttctgtgagaggcttttgacg-aagagtataactaaaaagaa-gatttttcatacaaaagga 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||    
T  8643521 aagatcttgaatgatgacttgacaagtaccctcctccttctgtgagaggcttttgatgaaagagtacaactaaaaagaaggatttttcatacaaaagga 8643423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 8644149 - 8643942
Alignment:
Q  9 ttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  8644149 ttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactca 8644050  T
Q  109 aggtgagaatgtagctgctaagattttattttgattgacaaattgaatttgatgctcccttacaaatcatacaaaccctttcccctaaatatatatgtga 208  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644049 aggtaagaatgtagctgctaagattttattttgattgacaaattgaatttgatgctcccttacaaatcatacaaaccctttcccctaaatatatatgtga 8643950  T
Q  209 gcttccta 216  Q
    ||||||||    
T  8643949 gcttccta 8643942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 8677745 - 8677618
Alignment:
Q  6 cacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8677745 cacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccac 8677646  T
Q  106 tcaaggtgagaatgtagctgctaagatt 133  Q
    ||||||| ||||||||||||||||||||    
T  8677645 tcaaggtaagaatgtagctgctaagatt 8677618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 8636807 - 8636654
Alignment:
Q  6 cacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccac 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  8636807 cacttcttccgagtttgttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccac 8636708  T
Q  106 tcaaggtgagaatgtagctgctaagattttattttgattgacaaattgaatttg 159  Q
    ||||||| ||||||||| | |||| |||||||||||||||| |||| |||||||    
T  8636707 tcaaggttagaatgtagattctaacattttattttgattgagaaatcgaatttg 8636654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 271 - 412
Target Start/End: Complemental strand, 8677623 - 8677481
Alignment:
Q  271 aagattattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaac-aagttctttga 369  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||| |||| || ||  ||||    
T  8677623 aagattattcgctaatattgttttaattgatataggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttccttgtcacaacaaatttgattga 8677524  T
Q  370 gatttggaattacacgttcttcatcatcttatggtgacttgat 412  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  8677523 gatttggaattacacattcttcatcatcttatggtgacttgat 8677481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 434 - 649
Target Start/End: Complemental strand, 8636280 - 8636064
Alignment:
Q  434 atggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggca 533  Q
    |||| ||||||||||  ||||||||  ||| ||| || |||| |||||||||||||||||||| ||||| | | |||||||| || |||||||||||| |    
T  8636280 atggtgaagaattcggcgatgagcccatatcttaagagaagtgcgtctcttttcacattgatggggatactgtaacccttgcttaatacaattttaggta 8636181  T
Q  534 c-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgac 632  Q
    | ||||| ||||||| ||  |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| || ||| |    
T  8636180 cattactaaggctctgttacgtaatattggcgttattttatataggtatgcaaattttaaattaagtgaagaaaatgaagatcttgaatgacgatttggc 8636081  T
Q  633 aagtaccctcctccttc 649  Q
    |||| | ||||||||||    
T  8636080 aagtgctctcctccttc 8636064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 276 - 625
Target Start/End: Complemental strand, 8528207 - 8527857
Alignment:
Q  276 tattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttg 375  Q
    ||||||| |||||||||||||||  ||||||||||||||  | |||||||  | |||||| || ||||||||  ||||||||||  || ||||||| |||    
T  8528207 tattccccaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttg 8528108  T
Q  376 gaattacacgttcttcatcatcttatggtgacttgattaatatattttcctcagt--ctaatggggaagaattcgatgatgagcctgtatattatgaaaa 473  Q
     || | || | | ||||||||||||| |||||||||| ||||||| ||||||  |  || |||| ||||| || |  || |||||||  |  || ||| |    
T  8528107 aaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggcgaagagcctgcttcctaagaaga 8528008  T
Q  474 gtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttatttta 572  Q
    ||||||||  ||||  ||||||  |  ||||||||||| ||| || |||||||||||| |  |||||||| || | || |||||||||||||||||||||    
T  8528007 gtacgtctgctttcgtattgattgg--tattctgacccctgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttatttta 8527910  T
Q  573 tataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatg 625  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||||||||||    
T  8527909 tataggtgtgcaaatattaaattgcatgaagaagatgaagatcttgaatgatg 8527857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 8535424 - 8535307
Alignment:
Q  23 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtag 122  Q
    ||||| |||| |||||  ||||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  8535424 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaagaatgtag 8535325  T
Q  123 ctgctaagattttatttt 140  Q
    || |||||||||||||||    
T  8535324 cttctaagattttatttt 8535307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 1600463 - 1600585
Alignment:
Q  23 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtag 122  Q
    |||||||||| || ||| ||||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  1600463 ttgaaataatcccgcatattccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaagaatgtag 1600562  T
Q  123 ctgctaagattttattttgattg 145  Q
    || | || |||||||||| ||||    
T  1600563 cttcaaatattttatttttattg 1600585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 9074903 - 9075020
Alignment:
Q  23 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtag 122  Q
    ||||| |||| |||||| ||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  9074903 ttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaagaatgtag 9075002  T
Q  123 ctgctaagattttatttt 140  Q
    || |||| | ||||||||    
T  9075003 cttctaatactttatttt 9075020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 247 - 379
Target Start/End: Complemental strand, 8636422 - 8636291
Alignment:
Q  247 ttgttaagtaataagtagtttttcaagattattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttcttt 346  Q
    |||||||| ||| | |||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||  ||||||  |||||||||||||||||||    
T  8636422 ttgttaagcaatcaatagtttttta-gattattccctcatattgttttgattgatataggtgtgcaaatgttgaattgccggaagaaaatgaagttcttt 8636324  T
Q  347 ccttgtctcaacaagttctttgagatttggaat 379  Q
    ||||||||||||||  | |||||||||||||||    
T  8636323 ccttgtctcaacaaactgtttgagatttggaat 8636291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 8548274 - 8548369
Alignment:
Q  23 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaat 118  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| || |||||    
T  8548274 ttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaagaat 8548369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 501 - 624
Target Start/End: Complemental strand, 8640573 - 8640449
Alignment:
Q  501 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatat 599  Q
    |||| |||||| ||| |||||||||||||||||| |||||||| || | ||| |||  ||||||||||||||||||||||||||||| ||||||||   |    
T  8640573 tattttgacccctgcttactacaattttaggcacgttacttagactttgtttcgtaccattggtgttattttatataggtgtgcaaaatttaaattgcgt 8640474  T
Q  600 gaagaaaatgaagatcttgaatgat 624  Q
    |||||||||||||||||||||||||    
T  8640473 gaagaaaatgaagatcttgaatgat 8640449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 8528869 - 8528780
Alignment:
Q  23 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggt 112  Q
    ||||| |||| |||||  ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  8528869 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggt 8528780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 434 - 573
Target Start/End: Complemental strand, 8677482 - 8677342
Alignment:
Q  434 atggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggca 533  Q
    |||| |||||||| | ||| |||||  ||||| | ||||||||||||||||||||| |||||| | ||||||||| || | | ||||||||||||||| |    
T  8677482 atggtgaagaatttggtgacgagcccatatatgaagaaaagtacgtctcttttcactttgatgggaatattctgatccgtccttactacaattttaggaa 8677383  T
Q  534 -cttacttaggctcttttttgtaatattggtgttattttat 573  Q
      |||||| |||||| |||||||||||||||||||||||||    
T  8677382 tgttacttgggctctgttttgtaatattggtgttattttat 8677342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 552 - 644
Target Start/End: Complemental strand, 9002354 - 9002262
Alignment:
Q  552 tgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcct 644  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||   ||||||||||||||||||||||||| |||||||| | |||||||||    
T  9002354 tgtaatattggtgttgttttgtataggtgtgcaaagtttaaattgcgtgaagaaaatgaagatcttgaatgacgacttgactattaccctcct 9002262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 535 - 634
Target Start/End: Original strand, 9075307 - 9075406
Alignment:
Q  535 ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaa 634  Q
    |||||||| || | || ||||||| || |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||| ||||    
T  9075307 ttacttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaaattgcatgaagagaatgaagatcttgaatgatgtcttaacaa 9075406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 9003399 - 9003247
Alignment:
Q  17 aatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactca---aggtg 113  Q
    |||| |||||| ||||||||||| ||||||||||||||||||||||||| | ||| || ||||||||| |||||||| ||||| || |||||   ||||     
T  9003399 aattagttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaatgtctactcaaggaggta 9003300  T
Q  114 agaatgtagctgctaagattttattttgattgacaaattgaatttgatgctcc 166  Q
    || |||||||| |||| |||| ||||| ||| |  |||| |||||||||||||    
T  9003299 aggatgtagcttctaatatttgattttcattaagtaattaaatttgatgctcc 9003247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 554 - 647
Target Start/End: Complemental strand, 8420485 - 8420392
Alignment:
Q  554 taatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcctcct 647  Q
    ||||| |||||||||||||||||||| |||||| ||  |||  |  ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  8420485 taatactggtgttattttatataggtttgcaaagttagaatcgtgcgaagaaaataaagatcttgaatgatgacttgacaagtatcctcctcct 8420392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 276 - 420
Target Start/End: Complemental strand, 8534772 - 8534627
Alignment:
Q  276 tattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttg---tctcaacaagttctttgagat 372  Q
    ||||||| ||||||||||||||| |||||||||||||||  | |||||||  |||||||| ||||||||||| |||   ||||||| | || |||||||     
T  8534772 tattccccaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaaaggaagttctttctttgcgatctcaacga-ttgtttgagac 8534674  T
Q  373 ttggaattacacgttcttcatcatcttatggtgacttgattaatatat 420  Q
    || ||| | || ||| |||||||||||||||||||||||| |||||||    
T  8534673 tt-gaagttcatgtttttcatcatcttatggtgacttgataaatatat 8534627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 8640750 - 8640670
Alignment:
Q  278 ttccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaac 358  Q
    ||||||||||||||||||||| |||||||||||||||  | ||||||   ||||||||||||||| |||||||||||||||    
T  8640750 ttccctaatattgttttaatttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctcaac 8640670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 8641298 - 8641186
Alignment:
Q  22 gttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgta 121  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    |||||||| ||| | ||||| |||||||||  |||||||     
T  8641298 gttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagg----aatattgaagtgttaaatattcactcaaggcaagaatgtt 8641203  T
Q  122 gctgctaagattttattt 139  Q
    ||| |||| |||||||||    
T  8641202 gcttctaa-attttattt 8641186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 501 - 618
Target Start/End: Complemental strand, 8534558 - 8534438
Alignment:
Q  501 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaa--ttttaaattat 597  Q
    ||||||||||||||| || |||||||||||| |  |||||||| ||   |  |||||||||||||||||||||||||||||| ||||  |||||| ||      
T  8534558 tattctgacccttgcttattacaattttaggtatgttacttagacttcgtcatgtaatattggtgttattttatataggtgttcaaattttttaatttgc 8534459  T
Q  598 atgaagaaaatgaagatcttg 618  Q
    |||||||||||||||||||||    
T  8534458 atgaagaaaatgaagatcttg 8534438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 2905126 - 2905250
Alignment:
Q  22 gttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatatt---gaggtgctgaatatccactcaaggtgagaat 118  Q
    |||||| | |||| |||| ||||||||||||| |||||||| ||||| ||||| ||||||||| ||   ||||||||||| ||| |||||||||   |||    
T  2905126 gttgaagttattcaacatattccaagtctaatatcattgaaagatgtcgtgaatggagacaatgttgaggaggtgctgaacatctactcaaggtagtaat 2905225  T
Q  119 gtagctgctaagattttattttgat 143  Q
    ||||||  ||| |||||||||||||    
T  2905226 gtagcttataatattttattttgat 2905250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 8548782 - 8548860
Alignment:
Q  281 cctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaaca 359  Q
    |||||||||||||||||| ||||||||||| |||  | ||||| || |||||||| |||||| |||| |||||||||||    
T  8548782 cctaatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaaca 8548860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 552 - 628
Target Start/End: Original strand, 8549071 - 8549148
Alignment:
Q  552 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaagaaaatgaagatcttgaatgatgact 628  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||||  || |||||||  |||||||||||||||||||    
T  8549071 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 8549148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 1601056 - 1601096
Alignment:
Q  274 attattccctaatattgttttaattgatataggtgtgcaaa 314  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  1601056 attattcccaaatattgttttaatttatataggtgtgcaaa 1601096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 2845225 - 2845273
Alignment:
Q  41 ttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattga 89  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||| ||||    
T  2845225 ttccaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2845273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 2857046 - 2857094
Alignment:
Q  41 ttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattga 89  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||| ||||    
T  2857046 ttccaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2857094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 9075344 - 9075389
Alignment:
Q  300 atataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctt 345  Q
    |||||||||||||||| | |||||||||||||| ||||||| ||||    
T  9075344 atataggtgtgcaaattttaaattgcatgaagagaatgaagatctt 9075389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 11354671 - 11354728
Alignment:
Q  42 tccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaat 99  Q
    |||| |||| |||||||||||||||||||| ||||||| ||| || ||||||| ||||    
T  11354671 tccaggtctcatctcattgaaggatgttgttaaaggaggcaacatcgaggtgcagaat 11354728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 11372722 - 11372665
Alignment:
Q  42 tccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaat 99  Q
    |||| |||| |||||||||||||||||||| ||||||| ||| || ||||||| ||||    
T  11372722 tccaggtctcatctcattgaaggatgttgttaaaggaggcaacatcgaggtgcagaat 11372665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 2874660 - 2874704
Alignment:
Q  45 aagtctaatctcattgaaggatgttgtgaaaggagacaatattga 89  Q
    ||||||||| |||||||| ||||| ||||||||||||||| ||||    
T  2874660 aagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2874704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 599 - 631
Target Start/End: Original strand, 27458082 - 27458114
Alignment:
Q  599 tgaagaaaatgaagatcttgaatgatgacttga 631  Q
    ||||||||||||||||||||||||| |||||||    
T  27458082 tgaagaaaatgaagatcttgaatgacgacttga 27458114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 284 - 625
Target Start/End: Complemental strand, 9442360 - 9442024
Alignment:
Q  284 aatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttggaattaca 383  Q
    |||||||||||||||  ||||||||||||||  | |||||||  | |||||| || ||||||||  ||||||||       ||||||||||| || | ||    
T  9442360 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaag------tttgagatttgaaagttca 9442267  T
Q  384 cgttcttcatcatcttatggtgacttgattaatatattttcctcagt--ctaatggggaagaattcgatgatgagcctgtatattatgaaaagtacgtct 481  Q
     | | ||||||||||||| |||||||||| ||||||| ||||||  |  || |||| ||||| || | ||| |||||||  |  || ||| |||||||||    
T  9442266 tgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtct 9442167  T
Q  482 cttttcacattgatgaggatattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtg 580  Q
      ||||  ||||||  |  ||||||||||||||| || |||||||||||| |  |||||||| || | || |||||||||||||||||||||||||||||    
T  9442166 gctttcgtattgattgg--tattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtg 9442069  T
Q  581 tgcaaattttaaattatatgaagaaaatgaagatcttgaatgatg 625  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||    
T  9442068 tgcaaatattaaattacatgaagaaaatgaagatcttgaatgatg 9442024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 9443012 - 9442941
Alignment:
Q  41 ttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggt 112  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  9443012 ttccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggt 9442941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 4583 - 4488
Alignment:
Q  23 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaat 118  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  4583 ttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaagaat 4488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 16716264 - 16716175
Alignment:
Q  29 taattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaat 118  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||||||||||| |||||||||||||||||| |||||    
T  16716264 taattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaagaat 16716175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 5130729 - 5130640
Alignment:
Q  23 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggt 112  Q
    ||||| ||||||||||| || |||||||||| ||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  5130729 ttgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaatattgaggtgctgaatattcactcaaggt 5130640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 501 - 592
Target Start/End: Complemental strand, 5129911 - 5129819
Alignment:
Q  501 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaa 592  Q
    ||||||||| | ||| || ||||||||||||||| ||| ||||||  | ||  ||||||||||| ||||||||||||||||||||||||||||    
T  5129911 tattctgactcctgcttagtacaattttaggcacattatttaggccttgttacgtaatattggtcttattttatataggtgtgcaaattttaa 5129819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 619
Target Start/End: Original strand, 26324948 - 26325001
Alignment:
Q  566 tattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttga 619  Q
    ||||||||||||||||||||| || || ||  ||||||||||||||||||||||    
T  26324948 tattttatataggtgtgcaaaattgaatttgcatgaagaaaatgaagatcttga 26325001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 427
Target Start/End: Original strand, 26324397 - 26324435
Alignment:
Q  389 ttcatcatcttatggtgacttgattaatatattttcctc 427  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  26324397 ttcatcatcttatggtgacttgataaatatatcttcctc 26324435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 35779762 - 35779694
Alignment:
Q  21 tgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattga 89  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  35779762 tgttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaatattga 35779694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 552 - 639
Target Start/End: Original strand, 48362758 - 48362844
Alignment:
Q  552 tgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtacc 639  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||  ||||||| ||||    
T  48362758 tgtaatattcgtgttattt-atataggtgtgcaaatattaaattacatgaagaaaatgaagatctcgaatgatggtttgacaaatacc 48362844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 552 - 680
Target Start/End: Complemental strand, 35777444 - 35777313
Alignment:
Q  552 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctc-ctccttc 649  Q
    |||||||||||||||||||| |||||  ||||||| ||||||| |  |  ||| ||||||||||||||||||||||||||||||||| |||| |||||||    
T  35777444 tgtaatattggtgttattttgtatagtcgtgcaaagttttaaactgcagtaagtaaatgaagatcttgaatgatgacttgacaagtatcctctctccttc 35777345  T
Q  650 tgt-gagaggcttttgacgaagagtataacta 680  Q
     || | || ||||||| ||||||||| |||||    
T  35777344 ggtggtgacgcttttggcgaagagtacaacta 35777313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 35777608 - 35777467
Alignment:
Q  278 ttccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttgg- 376  Q
    ||||||||||||||| | ||  |||||||||||||||    ||||||   ||||||| ||||||||||| |||| ||||| || || ||||||| ||||     
T  35777608 ttccctaatattgttgtcatgtatataggtgtgcaaagtataaattgtgggaagaaagtgaagttcttttcttggctcaagaatttgtttgagacttggt 35777509  T
Q  377 aattacacgttcttcatcatcttatggtgacttgattaatata 419  Q
    || || ||||||||||||||||||| |||||||||| ||||||    
T  35777508 aagtatacgttcttcatcatcttat-gtgacttgataaatata 35777467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 48362064 - 48362138
Alignment:
Q  50 taatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagct 124  Q
    |||| ||||||||||||||  |||||||||| ||||| |||||| ||||| |||||||||||| |||||||||||    
T  48362064 taatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaagaatgtagct 48362138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 48362518 - 48362584
Alignment:
Q  274 attattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaag 340  Q
    ||||||||  ||||||| ||||||| |||||||||||||||  | |||||||| |||||||| ||||    
T  48362518 attattcctgaatattggtttaatttatataggtgtgcaaagtttaaattgcaggaagaaaaggaag 48362584  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 48362777 - 48362817
Alignment:
Q  300 atataggtgtgcaaatgtcaaattgcatgaagaaaatgaag 340  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  48362777 atataggtgtgcaaatattaaattacatgaagaaaatgaag 48362817  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 572 - 638
Target Start/End: Original strand, 44438492 - 44438558
Alignment:
Q  572 atataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtac 638  Q
    |||||||| |||||||||||||||    ||| ||| |||||||| | ||||||||||||||||||||    
T  44438492 atataggtctgcaaattttaaattgcgagaaaaaagtgaagatcgtaaatgatgacttgacaagtac 44438558  T

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