View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1584-INSERTION-9 (Length: 696)

Name: NF1584-INSERTION-9
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1584-INSERTION-9
NF1584-INSERTION-9
[»] chr6 (12 HSPs)
chr6 (319-661)||(7046714-7047061)
chr6 (9-135)||(2981666-2981793)
chr6 (478-566)||(9170854-9170942)
chr6 (100-184)||(2949778-2949862)
chr6 (478-566)||(9159486-9159574)
chr6 (478-565)||(7025793-7025880)
chr6 (478-565)||(7029850-7029937)
chr6 (479-566)||(7041534-7041621)
chr6 (478-566)||(7012857-7012945)
chr6 (142-184)||(2981414-2981456)
chr6 (573-650)||(9170970-9171046)
chr6 (135-175)||(3028508-3028548)
[»] chr2 (2 HSPs)
chr2 (190-320)||(20348285-20348415)
chr2 (421-539)||(20694319-20694439)
[»] chr5 (3 HSPs)
chr5 (187-316)||(26442689-26442818)
chr5 (482-566)||(33541693-33541777)
chr5 (490-564)||(18571160-18571234)
[»] chr8 (4 HSPs)
chr8 (189-315)||(37242515-37242641)
chr8 (477-540)||(44688802-44688865)
chr8 (281-314)||(26781861-26781894)
chr8 (182-242)||(287252-287312)
[»] chr3 (15 HSPs)
chr3 (459-563)||(9343863-9343967)
chr3 (477-563)||(9448350-9448436)
chr3 (405-539)||(41985590-41985726)
chr3 (477-536)||(41980890-41980949)
chr3 (478-539)||(9695634-9695695)
chr3 (479-539)||(9655375-9655435)
chr3 (477-539)||(9494826-9494888)
chr3 (485-539)||(9646382-9646436)
chr3 (488-539)||(9340718-9340769)
chr3 (485-539)||(9626498-9626552)
chr3 (512-557)||(9613917-9613962)
chr3 (482-522)||(9407407-9407447)
chr3 (482-522)||(9416614-9416654)
chr3 (482-522)||(9441816-9441856)
chr3 (484-544)||(9617476-9617536)
[»] chr1 (5 HSPs)
chr1 (459-548)||(235231-235320)
chr1 (478-548)||(8814371-8814441)
chr1 (478-548)||(251403-251473)
chr1 (478-534)||(231618-231674)
chr1 (478-565)||(246904-246991)
[»] chr7 (1 HSPs)
chr7 (417-542)||(3695664-3695790)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 319 - 661
Target Start/End: Original strand, 7046714 - 7047061
Alignment:
Q  319 agaatcggacaaaggcggaagcagaccttgatccaagtccaaa-catacctcgcaagtgtcgcacgttttctaagtcctcttaagatatcatcactaatg 417  Q
    ||||||| ||||| ||||||||  ||||||||||||||||||| |||| |||||  ||| | || ||   ||||||| ||| ||||||||| ||||||||    
T  7046714 agaatcgcacaaaagcggaagccaaccttgatccaagtccaaaacatagctcgcctgtgacccaagtcgactaagtcttctaaagatatcagcactaatg 7046813  T
Q  418 atcacacaattcccgttggcaacaaaaagatctgaagcaaa--cagaaaacgaaaatttcatccccaagaacaaaactctatcccctaaactcgttaact 515  Q
    |||||||||||||| ||||||||| | | |||||||  | |  ||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  7046814 atcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaact 7046913  T
Q  516 tcacccacttcttctccttctcattaaacttaatcaaatcaaccc---ttacagtaaacacataaacgtctgctaacaacaaaatccccatctctctcca 612  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |   |||||| |||| ||| ||||  |||||||||| ||||||||||| |||||||    
T  7046914 tcacccacttcttctccttctcattaagcttaaacaaatcaacacttattacaggaaacgcatgaacgcatgctaacaac-aaatccccatcgctctcca 7047012  T
Q  613 ctaataatttcttcttcataccaccaaccaaaggttcaaccattaaatg 661  Q
    ||||||||||||| |||  ||||||| ||||||||||| ||| ||||||    
T  7047013 ctaataatttcttgttctcaccaccatccaaaggttcagccactaaatg 7047061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 2981793 - 2981666
Alignment:
Q  9 gttagggacactcatttactagcataaactaatgataagactccc-aagttaaatgcatattgtaacatttgcaataaatgtcgttcataggtcaatgga 107  Q
    |||||||||| |||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  2981793 gttagggacattcatttactagcataaactaatgaaaagattccccaagttaaatgcatattgtaccatttgcaatatttgtcgttcataggtcaatgga 2981694  T
Q  108 atcatagagagcaaggtggtggcttaat 135  Q
    ||||||||||||||||||||||||||||    
T  2981693 atcatagagagcaaggtggtggcttaat 2981666  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 478 - 566
Target Start/End: Original strand, 9170854 - 9170942
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaacccttacag 566  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacag 9170942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 2949862 - 2949778
Alignment:
Q  100 tcaatggaatcatagagagcaaggtggtggcttaatgtagcctaagatggctacatgaattaatgctattgtttatgagaaaaat 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||| ||||||||||| |||||||||||||||    
T  2949862 tcaatggaatcatagagagcaaggtggtggcttaatgtagcctaaggtggcttaatggattaatgctatcgtttatgagaaaaat 2949778  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 566
Target Start/End: Complemental strand, 9159574 - 9159486
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaacccttacag 566  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||| ||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacag 9159486  T

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Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 7025793 - 7025880
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaacccttaca 565  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

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Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 7029850 - 7029937
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaacccttaca 565  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

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Target: chr6; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 479 - 566
Target Start/End: Original strand, 7041534 - 7041621
Alignment:
Q  479 cccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaacccttacag 566  Q
    |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||  |||| |||||||| || |||||    
T  7041534 cccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaatccatacag 7041621  T

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Target: chr6; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 478 - 566
Target Start/End: Original strand, 7012857 - 7012945
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaacccttacag 566  Q
    ||||||||||||||  ||||| |||||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttacag 7012945  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 2981456 - 2981414
Alignment:
Q  142 taagatggctacatgaattaatgctattgtttatgagaaaaat 184  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  2981456 taagatggctaaatggattaatgctattgtttatgagaaaaat 2981414  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 650
Target Start/End: Original strand, 9170970 - 9171046
Alignment:
Q  573 cataaacgtctgctaacaacaaaatccccatctctctccactaataatttcttcttcataccaccaaccaaaggttca 650  Q
    |||||||||| |||||||||||| || || || ||||||||||| |||||| | |||  |||||||||||||||||||    
T  9170970 cataaacgtccgctaacaacaaa-tctccctcgctctccactaagaatttcatgttcccaccaccaaccaaaggttca 9171046  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 3028548 - 3028508
Alignment:
Q  135 tgtagcctaagatggctacatgaattaatgctattgtttat 175  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  3028548 tgtagcctaagatggctaaatggattaatgctattgtttat 3028508  T

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Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 20348415 - 20348285
Alignment:
Q  190 tctctattataaacatttgacttcatgattttgaagaatacaattggcatttttatatgttaaacttcatttaatgtattacacacctaagcatcactaa 289  Q
    ||||||||||||||||||| ||| ||  ||||||||| |||| |||||| | || ||||| |||||| |||||||||||||||||| |||||||||||||    
T  20348415 tctctattataaacatttgccttaatttttttgaagagtacacttggcactcttttatgtaaaactttatttaatgtattacacacttaagcatcactaa 20348316  T
Q  290 tacacatgtgcacctcatcatctaattgtag 320  Q
    |||| |||| |||||||||||||||||||||    
T  20348315 tacaaatgtacacctcatcatctaattgtag 20348285  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 539
Target Start/End: Complemental strand, 20694439 - 20694319
Alignment:
Q  421 acacaattcccgttggcaacaaaaagatctgaagcaaa--cagaaaacgaaaatttcatccccaagaacaaaactctatcccctaaactcgttaacttca 518  Q
    ||||||||||| ||||||||| | | ||| |||||| |  ||||||||||| ||    ||||||| |||||||| |||||||| ||||| || ||  |||    
T  20694439 acacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgtcaaactca 20694340  T
Q  519 cccacttcttctccttctcat 539  Q
    |||| ||||||||||| ||||    
T  20694339 cccatttcttctccttttcat 20694319  T

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Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 187 - 316
Target Start/End: Original strand, 26442689 - 26442818
Alignment:
Q  187 ctatctctattataaacatttgacttcatgattttgaagaatacaattggcatttttatatgttaaacttcatttaatgtattacacacctaagcatcac 286  Q
    |||||| ||||||| | ||||| ||| ||  ||||||||| |||| |||| | | || ||||| |||||||||||||||||||||||||||| |||||||    
T  26442689 ctatctttattatatatatttgccttaatttttttgaagagtacacttggtactcttctatgtaaaacttcatttaatgtattacacacctaggcatcac 26442788  T
Q  287 taatacacatgtgcacctcatcatctaatt 316  Q
     |||||||||||||||||||||||||||||    
T  26442789 caatacacatgtgcacctcatcatctaatt 26442818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 482 - 566
Target Start/End: Original strand, 33541693 - 33541777
Alignment:
Q  482 aagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaacccttacag 566  Q
    |||||||||||  |||| ||||||||| ||||||||||||||| | ||||||||||||||| ||||| ||||| || ||||||||    
T  33541693 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacag 33541777  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 18571160 - 18571234
Alignment:
Q  490 aactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaacccttac 564  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||||| || |||||  ||||||| ||||||    
T  18571160 aactgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaagcttaaagaaatcaatccttac 18571234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 37242515 - 37242641
Alignment:
Q  189 atctctattataaacatttgacttcatgattttgaagaatacaattggcatttttatatgttaaacttcatttaatgtattacacacctaagcatcacta 288  Q
    |||| ||||||| | ||||| ||| ||  ||||||||| |||| |||||| | || ||||| |||||||||||||||||||||||||| | ||||||| |    
T  37242515 atctttattatatatatttgccttaatttttttgaagagtacacttggcactcttctatgtaaaacttcatttaatgtattacacacccaggcatcacca 37242614  T
Q  289 atacacatgtgcacctcatcatctaat 315  Q
    |||||||||||||||| ||||||||||    
T  37242615 atacacatgtgcaccttatcatctaat 37242641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 540
Target Start/End: Complemental strand, 44688865 - 44688802
Alignment:
Q  477 tccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcatt 540  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||| ||||| | |||||||||    
T  44688865 tccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctcatt 44688802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 26781894 - 26781861
Alignment:
Q  281 catcactaatacacatgtgcacctcatcatctaa 314  Q
    |||||||||||||| |||||||||||||||||||    
T  26781894 catcactaatacacgtgtgcacctcatcatctaa 26781861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 287252 - 287312
Alignment:
Q  182 aatctctatctctattataaacatttgacttcatgattttgaagaatacaattggcatttt 242  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||| | ||||  |||||||||    
T  287252 aatctctatctctattataaacatttgccttaatttttttgaaaagtacacatggcatttt 287312  T

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Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 459 - 563
Target Start/End: Original strand, 9343863 - 9343967
Alignment:
Q  459 cagaaaacgaaaatttcatccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaac 558  Q
    ||||||||||| |||   |||||||||||||||| |||||||||||| | |||||||||||||||||||||||| |||||| || ||||| || ||||||    
T  9343863 cagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacacatcaac 9343962  T
Q  559 cctta 563  Q
    |||||    
T  9343963 cctta 9343967  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 477 - 563
Target Start/End: Original strand, 9448350 - 9448436
Alignment:
Q  477 tccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaaccctta 563  Q
    |||||||||||||||| |||||||||||| | |||||||||||||| |||||||||||||||| || ||||| || |||||||||||    
T  9448350 tccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataaagcttaaacacatcaaccctta 9448436  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 405 - 539
Target Start/End: Original strand, 41985590 - 41985726
Alignment:
Q  405 atcatcactaatgatcacacaattcccgttggcaacaaaaagatctgaagcaaa--cagaaaacgaaaatttcatccccaagaacaaaactctatcccct 502  Q
    ||||||||||| ||| |||||||| || ||| ||||| | | ||| |||||| |  ||||||||||| ||    ||||||||||||||||||||||||||    
T  41985590 atcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 41985689  T
Q  503 aaactcgttaacttcacccacttcttctccttctcat 539  Q
    |||||||  ||||| ||||| ||||||||||||||||    
T  41985690 aaactcgccaacttgacccatttcttctccttctcat 41985726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 41980890 - 41980949
Alignment:
Q  477 tccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttct 536  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||    
T  41980890 tccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttct 41980949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 539
Target Start/End: Complemental strand, 9695695 - 9695634
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcat 539  Q
    |||||| |||||||| |||||||||||| | || ||||| ||||||||||||||||||||||    
T  9695695 ccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcat 9695634  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 9655435 - 9655375
Alignment:
Q  479 cccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcat 539  Q
    ||||| |||||||| |||||||||||| || | ||||||||||| ||||||||||||||||    
T  9655435 cccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcat 9655375  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 539
Target Start/End: Complemental strand, 9494888 - 9494826
Alignment:
Q  477 tccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcat 539  Q
    |||||||||||||||| ||||||||||||||| | || ||||||||  || ||||||||||||    
T  9494888 tccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcat 9494826  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 539
Target Start/End: Complemental strand, 9646436 - 9646382
Alignment:
Q  485 aacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcat 539  Q
    |||||||| |||||||||||| || | ||||||||||| ||||||||||||||||    
T  9646436 aacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcat 9646382  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 9340718 - 9340769
Alignment:
Q  488 aaaactctatcccctaaactcgttaacttcacccacttcttctccttctcat 539  Q
    ||||| |||||||| ||| || | ||||||||||||||||||||||||||||    
T  9340718 aaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcat 9340769  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 539
Target Start/End: Complemental strand, 9626552 - 9626498
Alignment:
Q  485 aacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcat 539  Q
    |||||||| |||||||||||| || | || |||||||| ||||||||||||||||    
T  9626552 aacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcat 9626498  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 557
Target Start/End: Complemental strand, 9613962 - 9613917
Alignment:
Q  512 aacttcacccacttcttctccttctcattaaacttaatcaaatcaa 557  Q
    |||||||||||||||||||||||||||| || |||||  |||||||    
T  9613962 aacttcacccacttcttctccttctcatcaagcttaaaaaaatcaa 9613917  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 482 - 522
Target Start/End: Original strand, 9407407 - 9407447
Alignment:
Q  482 aagaacaaaactctatcccctaaactcgttaacttcaccca 522  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  9407407 aagaacaaaaccctatcccctaaactcatcaacttcaccca 9407447  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 482 - 522
Target Start/End: Original strand, 9416614 - 9416654
Alignment:
Q  482 aagaacaaaactctatcccctaaactcgttaacttcaccca 522  Q
    |||||||| || ||||||||||||||||| |||||||||||    
T  9416614 aagaacaacaccctatcccctaaactcgtcaacttcaccca 9416654  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 9441856 - 9441816
Alignment:
Q  482 aagaacaaaactctatcccctaaactcgttaacttcaccca 522  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  9441856 aagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 484 - 544
Target Start/End: Complemental strand, 9617536 - 9617476
Alignment:
Q  484 gaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaac 544  Q
    ||||||||| |||||||||||| |  | ||||||||||| |||||||| ||||||| ||||    
T  9617536 gaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatgaaac 9617476  T

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Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 459 - 548
Target Start/End: Original strand, 235231 - 235320
Alignment:
Q  459 cagaaaacgaaaatttcatccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaa 548  Q
    ||||||||||| ||  || ||||||||| |||||||||||||||||| | |  ||||||||||||||||||||||| ||||||| |||||    
T  235231 cagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcattaagcttaa 235320  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 478 - 548
Target Start/End: Complemental strand, 8814441 - 8814371
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaa 548  Q
    |||||| ||||||||||||||||||||| |||  ||||||||||||||||||||||| || |||| |||||    
T  8814441 ccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctccttttcgttaagcttaa 8814371  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 478 - 548
Target Start/End: Complemental strand, 251473 - 251403
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaa 548  Q
    |||||||||||||||||||||||||| | |||  ||||| ||||||||||| ||||| ||||||| |||||    
T  251473 ccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcattaagcttaa 251403  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 534
Target Start/End: Original strand, 231618 - 231674
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctcctt 534  Q
    |||||||||||||||| ||||||||||| | |  ||||||||||||||| |||||||    
T  231618 ccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 246904 - 246991
Alignment:
Q  478 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcttctccttctcattaaacttaatcaaatcaacccttaca 565  Q
    |||||||||||||||| |||| |||||| | |  ||||||||||| ||||||||| |  |||||| ||||| ||| |||| |||||||    
T  246904 ccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacaagtcaatccttaca 246991  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 542
Target Start/End: Original strand, 3695664 - 3695790
Alignment:
Q  417 gatcacacaattcccgttggcaacaaaaagatctgaagcaaa--cagaaaacgaaaatttcatccccaagaacaaaactctatcccctaaactcgttaac 514  Q
    ||||||||||||||| |||||| || | | ||| |||||||   ||||||| ||| || | || || |||||||||||||||||||||||||||   |||    
T  3695664 gatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctacaac 3695763  T
Q  515 ttcacccacttcttctccttctcattaa 542  Q
    || |  |||||||||| |||||||||||    
T  3695764 ttga-tcacttcttcttcttctcattaa 3695790  T

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