View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_high_10 (Length: 328)
Name: NF15840_high_10
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 41861395 - 41861163
Alignment:
| Q |
1 |
taacagggaggaattgttggatctttagaaggaaattgttggttttataaaatatcaggtataatctttatacatatatct-------------ccatat |
87 |
Q |
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| T |
41861395 |
taacagggaggaattgttggatctttagaaggaaattgttggttttataaaatatcaggtataatctttatacatatatcttgcccatatatctccatat |
41861296 |
T |
|
| Q |
88 |
tccatttaagttattttttgacccttcgatttttggtacttctgaaatgtagttagttttaataatcaaaatgttaggttttgctattaaaccatagatt |
187 |
Q |
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| T |
41861295 |
tccatttaagttattttttgacccttcgatttttggtacttctgaaatgtagttagttttaataatcaaaatgttaggttttgctattaaaccgtagatt |
41861196 |
T |
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| Q |
188 |
tcgaataagaagtaacaagattaagtctaccgc |
220 |
Q |
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| T |
41861195 |
ttgaataagaagtaacaagattaagtctaccgc |
41861163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 204 - 310
Target Start/End: Complemental strand, 41861145 - 41861039
Alignment:
| Q |
204 |
aagattaagtctaccgcaaaatgttaatcaagttatattgggatgttgtgattttcattagtcttttaaactactacaatcacttaagacttgagcatgg |
303 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41861145 |
aagattaagtctaccgcaaaatattaatcaagttatattgggatgttgtcattttcattagtcttttaaactactacaatcacttgagacttgagcatgg |
41861046 |
T |
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| Q |
304 |
tcctaac |
310 |
Q |
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| T |
41861045 |
tcctaac |
41861039 |
T |
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