View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15840_high_11 (Length: 288)

Name: NF15840_high_11
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15840_high_11
NF15840_high_11
[»] chr4 (2 HSPs)
chr4 (15-270)||(39300388-39300643)
chr4 (78-242)||(19333391-19333555)
[»] chr5 (2 HSPs)
chr5 (15-224)||(26880318-26880530)
chr5 (54-270)||(22295864-22296080)
[»] chr2 (2 HSPs)
chr2 (51-238)||(41939415-41939602)
chr2 (48-238)||(36259877-36260067)
[»] chr1 (2 HSPs)
chr1 (94-262)||(41939895-41940063)
chr1 (54-157)||(21035748-21035851)
[»] chr8 (2 HSPs)
chr8 (48-238)||(13516753-13516943)
chr8 (48-238)||(13606286-13606476)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 39300388 - 39300643
Alignment:
Q  15 ctgaaatgaacccatccacgaccattgttagacctaccatgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaaaccattga 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39300388 ctgaaaagaacccatccacgaccattgttagacctaccatgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaagccattga 39300487  T
Q  115 aggatttcagaacactgcagacacactacaagaggaagcatggttcgaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300488 aggatttcagaacactgcagacacactacaagaggaagcatggttcaaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattg 39300587  T
Q  215 gagaactcatgagaaaaactgtggcaagcgttggctttgtatctgtggatcagatt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300588 gagaactcatgagaaaaactgtggcaagcgttggctttgtatctgtggatcagatt 39300643  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 19333391 - 19333555
Alignment:
Q  78 aagaacaacattgagcatccaagagctaaaccattgaaggatttcagaacactgcagacacactacaagaggaagcatggttcgaaaacattcacttgtc 177  Q
    |||||||||||  | |||||||||||||| || ||||| || || ||||| || || || |||||||| || || |||||  | ||| |||| |  |||     
T  19333391 aagaacaacatcaatcatccaagagctaagcctttgaaagactttagaactctccaaactcactacaaaagaaaacatgggacaaaaccatttatgtgta 19333490  T
Q  178 gaaaatgtgggaagccattggcagtgaaaggtgattggagaactcatgagaaaaactgtggcaag 242  Q
    |||||||||||||  |||| || || |||||||||||||| |||||||| || || |||||||||    
T  19333491 gaaaatgtgggaaaacatttgctgtcaaaggtgattggaggactcatgaaaagaattgtggcaag 19333555  T

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Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 26880318 - 26880530
Alignment:
Q  15 ctgaaatgaacccatccacgaccattgttagacctaccatgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaaaccattga 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26880318 ctgaaaagaacccatccacgaccattgttagacctaccatgctattgttgctcaaagggatgta-gaacaacattgagcatccaagagctaagccattga 26880416  T
Q  115 aggatttcagaacactgcagacac----actacaagaggaagcatggttcgaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtg 210  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||    
T  26880417 aggatttcagaacactgcagacacacacactacaagaggaagcatggttcgaagacgtttacttgtcgaaaatgtgggaagccattggcagtgaaaggtg 26880516  T
Q  211 attggagaactcat 224  Q
    ||||||||||||||    
T  26880517 attggagaactcat 26880530  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 54 - 270
Target Start/End: Complemental strand, 22296080 - 22295864
Alignment:
Q  54 tgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaaaccattgaaggatttcagaacactgcagacacactacaagaggaagc 153  Q
    |||||||| ||| || ||||||| ||||||||||| |||||||||||  | |  ||| | ||||||||||||||||| || |||||||||||||||||||    
T  22296080 tgctattgctgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagc 22295981  T
Q  154 atggttcgaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattggagaactcatgagaaaaactgtggcaagcgttggctttg 253  Q
    ||||  | ||  ||||    ||| |||| |||||||| ||||| ||||| | |||||| |||||||| ||||||||||||||||| |||| |||| ||||    
T  22295980 atggagcaaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttg 22295881  T
Q  254 tatctgtggatcagatt 270  Q
    |||||||||||| ||||    
T  22295880 tatctgtggatctgatt 22295864  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 41939415 - 41939602
Alignment:
Q  51 ccatgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaaaccattgaaggatttcagaacactgcagacacactacaagagga 150  Q
    ||||| ||||||||| ||   ||||| |||||||||||||| ||||||||||| |||||| |||| ||||| |||||||| || ||||| |||||||| |    
T  41939415 ccatgttattgttgtgcacctggatgcaagaacaacattgatcatccaagagcaaaaccactgaaagattttagaacacttcaaacacattacaagagaa 41939514  T
Q  151 agcatggttcgaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattggagaactcatgagaaaaactgtgg 238  Q
    |||||||    ||  |||| |  ||| |||| ||| | ||  |||| ||||| | |||||| ||||||||||| ||||||||||||||    
T  41939515 agcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaactgtgg 41939602  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 36260067 - 36259877
Alignment:
Q  48 ctaccatgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaaaccattgaaggatttcagaacactgcagacacactacaaga 147  Q
    |||||||| ||||||||| |  | || || |||||||||||  | ||||||||||| ||||||||||||||||||||||| || || || || ||||| |    
T  36260067 ctaccatgttattgttgtgctcacggttgcaagaacaacatcaatcatccaagagcaaaaccattgaaggatttcagaactctccaaactcattacaaaa 36259968  T
Q  148 ggaagcatggttcgaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattggagaactcatgagaaaaactgtgg 238  Q
    | ||||||||  | ||  |||| |  ||  ||||||||   ||  |||| || || ||||||||||||||||||||||| |||||||||||    
T  36259967 gaaagcatggaacaaagccatttatctgcagaaaatgttctaaagcatttgctgttaaaggtgattggagaactcatgaaaaaaactgtgg 36259877  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 41939895 - 41940063
Alignment:
Q  94 atccaagagctaaaccattgaaggatttcagaacactgcagacacactacaagaggaagcatggttcgaaaacattcacttgtcgaaaatgtgggaagcc 193  Q
    ||||||| || | |||| |||| ||||||||||| || || |||||||||||||| ||||| ||   |||| |||||   ||  |||| ||| ||||| |    
T  41939895 atccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagac 41939994  T
Q  194 attggcagtgaaaggtgattggagaactcatgagaaaaactgtggcaagcgttggctttgtatctgtgg 262  Q
    ||| || |||| ||| |||||||| ||||||||||| || ||||| |||| |||| |||||||||||||    
T  41939995 atttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgtatctgtgg 41940063  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 21035851 - 21035748
Alignment:
Q  54 tgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaaaccattgaaggatttcagaacactgcagacacactacaagaggaagc 153  Q
    |||||||||||||||   || || | |||||||||||| || |||||||| || |||||||| |||||||||||||| || ||||| || || ||||| |    
T  21035851 tgctattgttgttcaccaggttgcaggaacaacattgatcacccaagagcaaagccattgaaagatttcagaacacttcaaacacattataaaaggaaac 21035752  T
Q  154 atgg 157  Q
    ||||    
T  21035751 atgg 21035748  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 13516943 - 13516753
Alignment:
Q  48 ctaccatgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaaaccattgaaggatttcagaacactgcagacacactacaaga 147  Q
    |||||||||||||||||| ||   || || ||| |||||||||| ||||| ||||| || ||  | || ||||| ||||| || || ||||| || ||||    
T  13516943 ctaccatgctattgttgtgcaccaggttgcaagcacaacattgaccatcctagagcaaagcctctcaaagattttagaactcttcaaacacattataaga 13516844  T
Q  148 ggaagcatggttcgaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattggagaactcatgagaaaaactgtgg 238  Q
    | |||||||||   ||| | |  |  ||| |||||||||| ||  |||| ||||||||||||||||||||||| |||||||| || |||||    
T  13516843 gaaagcatggtataaaaccttatatgtgtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaattgtgg 13516753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 13606476 - 13606286
Alignment:
Q  48 ctaccatgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaaaccattgaaggatttcagaacactgcagacacactacaaga 147  Q
    |||||||||||||||||| ||   || || ||| |||||||||| ||||| ||||| || ||  | || ||||| ||||| || || ||||| || ||||    
T  13606476 ctaccatgctattgttgtgcaccaggttgcaagcacaacattgaccatcctagagcaaagcctctcaaagattttagaactcttcaaacacattataaga 13606377  T
Q  148 ggaagcatggttcgaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattggagaactcatgagaaaaactgtgg 238  Q
    | |||||||||   ||| | |  |  ||| |||||||||| ||  |||| ||||||||||||||||||||||| |||||||| || |||||    
T  13606376 gaaagcatggtataaaaccttatatgtgtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaattgtgg 13606286  T

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