View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_high_16 (Length: 259)
Name: NF15840_high_16
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_high_16 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 41036070 - 41036324
Alignment:
| Q |
1 |
attttaggagctacaaattctcaaggaagaaattaagtatcactgggaagagcataaaatgtttcagaagtgtaaaggagagtgtggtttgtgccagcaa |
100 |
Q |
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| T |
41036070 |
atttcaggagctacaaattctcaaggaagaaattaagtatcactgggaagagcataaaatgtttcagaagtgtaaaggagggtgtggtttgtgccagcaa |
41036169 |
T |
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| Q |
101 |
tagattaaatcataatattaagggtaattgtaagattctagggaatattactcatgctgctgtgtcagtctattgtagattgctttctcgatcagtctga |
200 |
Q |
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| T |
41036170 |
tagattaaatcataatattaagggtaattgtaagattctagggaatattactcatgctgctgtgtcagtctattgtagattgctttctcg----gtctga |
41036265 |
T |
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| Q |
201 |
taaggtccacatggctcgtcatgatttctattgtttcgtggtttctttttgcggcagat |
259 |
Q |
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| T |
41036266 |
taaggtccacatggctcgtcatgatttctattgtttcgtggtttctttttgcggtagat |
41036324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 41030473 - 41030702
Alignment:
| Q |
6 |
aggagctacaaattctcaaggaagaaattaagtatcactgggaagagcataaaatgtttcagaagtgtaaaggagagtgtggtttgtgccagcaatagat |
105 |
Q |
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| T |
41030473 |
aggagctacaaattctccaggaagaaattgagtgtaaccgagaagaccataaaatatttcagcagtttaaaagagagtgtgatttgtgctagcaatatat |
41030572 |
T |
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| Q |
106 |
taaatcataatattaagggtaattgtaagattctaggga---------atattactcatgctgctgtgtcagtctattgtagattgctttctcgatcagt |
196 |
Q |
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| T |
41030573 |
tatgttgtaatagtaagggtaatcgtaagattcctgggagggctaagcatatcactcatgctgctgtgtcagtctaccataggttgctttctcga----t |
41030668 |
T |
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| Q |
197 |
ctgataaggtccacatggctcgtcatgatttcta |
230 |
Q |
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| T |
41030669 |
ctgataaggtccatgtggctcgtcacgatttcta |
41030702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40636866 - 40636804
Alignment:
| Q |
1 |
attttaggagctacaaattctcaaggaagaaattaagtatcactgggaagagcataaaatgttt |
64 |
Q |
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| T |
40636866 |
atttgaggagctaaatattctcaaggaa-aaagtaagtatcactgggaataacataaaatgttt |
40636804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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