View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_high_17 (Length: 239)
Name: NF15840_high_17
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 11775037 - 11775243
Alignment:
| Q |
19 |
tccttcccgatgaagacgtggaaagcttagatgtttcattatttttcatgaatgagtttgcatcattccaattattgctctctataaacctatggagtgg |
118 |
Q |
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| T |
11775037 |
tccttcccgaagaagacttagaaaacatagatgtttcatcccttttcatgaatgcttttgcatcattccaattaccgctctcaataaatctatggagtga |
11775136 |
T |
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| Q |
119 |
tctattgttaaggagactatcatctaacacacctgcaaattaacatattattttaagttgcaatcatgtatatactcctaattaaatgaaaaagatatat |
218 |
Q |
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| T |
11775137 |
tttatattgatggagactatcatctaccacacctgcaaattaacatattattttaagttgcaatcatgtatatactcctaattaaatgaaaaagatatat |
11775236 |
T |
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| Q |
219 |
tgacact |
225 |
Q |
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||||||| |
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| T |
11775237 |
tgacact |
11775243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 11839220 - 11839410
Alignment:
| Q |
1 |
ctgcaacatgaagaatactccttcccgatgaagacgtggaaagcttagatgtttcattatttttcatgaatgagtttgcatcattccaattattgctctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||| | |||||||||||||||||| ||| || |
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| T |
11839220 |
ctgcaacatgaagaatactccttcccgatgaagacgtggaaaacatagatgcttcatcccttttcatgaataattttgcatcattccaattaccgctttc |
11839319 |
T |
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| Q |
101 |
tataaacctatggagtggtctattgttaaggagactatcatctaacacacctgcaaattaacatattattttaagttgcaatcatgtatata |
192 |
Q |
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| T |
11839320 |
aataaacctatggagtggtctatggtgaaggagactatcatctaccacacctgcaaattaacat-gtattttaagctacaatcatgtatata |
11839410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11794528 - 11794755
Alignment:
| Q |
1 |
ctgcaacatgaagaatactccttcccgatgaagacgtggaaagcttagatgtttcattatttttcatgaatgagtttgcatcattccaattattgctctc |
100 |
Q |
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||||||||||||||||| |||||||||| |||||| | |||| | |||||||||||| ||| |||||||||| |||||||| ||||||||| |||||| |
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| T |
11794528 |
ctgcaacatgaagaatagtccttcccgaagaagacatagaaaacatagatgtttcatcattattcatgaatgcttttgcatctttccaattaccgctctc |
11794627 |
T |
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| Q |
101 |
tataaacctatggagtggtctattgttaaggagactatcatctaacacacctgcaaattaacatattattttaagttgcaatcatgtat-----atactc |
195 |
Q |
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| T |
11794628 |
aataaatctatggagcgatctatggtgatggagactatcgtctaccacacctgcaaattaacata-tgttctaagctacaaacatttatataagatactc |
11794726 |
T |
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| Q |
196 |
ctaattaaatgaaaaagatatattgacac |
224 |
Q |
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| T |
11794727 |
ataattaaatgaaaaagatattttgacac |
11794755 |
T |
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