View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_high_4 (Length: 482)
Name: NF15840_high_4
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 38052045 - 38052512
Alignment:
| Q |
1 |
attctcaaatacatgatgaagattatgacaatatgcaaagctcaaggttttgtctatggtattgttccagagaaaggaaaaccagtaacaggttcttcag |
100 |
Q |
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| T |
38052045 |
attctcaaatacatgatgaagattatgacaatatgcaaagctcaaggttttgtctatggtattgttccagagaaaggaaaaccagtaacaggttcttcag |
38052144 |
T |
|
| Q |
101 |
aaagcttgcgtgaatggtggaaagaacaagttaaattcagtcaaaatgcaccagctgcagtttccaaatacttaccatcatcactcttagaaaatcaaca |
200 |
Q |
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| T |
38052145 |
aaagcttgcgtgaatggtggaaagaacaagttaaattcagtcaaaatgcaccagctgcagtttccaaatacttaccatcatcactcttagaaaatcaaca |
38052244 |
T |
|
| Q |
201 |
agagttagaattattagatcccatttcatcatatatgcatttactttatgacttgcaagatactactttaggttctcttctttcagctctaatgcaacac |
300 |
Q |
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| T |
38052245 |
agagttagaattattagatcccatttcatcatatatgcatttactttatgacttgcaagatactactttaggttctcttctttcagctctaatgcaacac |
38052344 |
T |
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| Q |
301 |
tgtgtgccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacagaacagtggtggggtcaacaaggtggtttgt |
400 |
Q |
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| T |
38052345 |
tgtgtaccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacagaacagtggtggggtcaacaaggtggtttgt |
38052444 |
T |
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| Q |
401 |
cagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
468 |
Q |
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| T |
38052445 |
cagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
38052512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 467
Target Start/End: Original strand, 39679769 - 39679965
Alignment:
| Q |
271 |
ggttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacag |
370 |
Q |
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||||| |||||||| ||| |||||||||| |||||||||||||| || || || || || || | || | ||||||| |||||||| | ||| ||| |
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| T |
39679769 |
ggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggggaatttctcctccctggtggcccacaggatcag |
39679868 |
T |
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| Q |
371 |
aacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgt |
467 |
Q |
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| T |
39679869 |
aaaattggtggggtgaacaaggtttgttggcccaagaacaaggcccaccaccttataagaaaccacatgaccttaaaaaggcatggaaagtttctgt |
39679965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 422 - 468
Target Start/End: Original strand, 41239896 - 41239942
Alignment:
| Q |
422 |
cttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
468 |
Q |
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| T |
41239896 |
cttataaaagaccttatgatttgaaaaaggcttggaaagtttctgtg |
41239942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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