View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_high_6 (Length: 442)
Name: NF15840_high_6
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 58 - 426
Target Start/End: Original strand, 21581405 - 21581774
Alignment:
| Q |
58 |
gttgaaaataacaaactcacttcaattctctcataccaatttcggtaggcnnnnnnnattcttnnnnnnnttgaaaagtacaaaacaaattgaaacaatt |
157 |
Q |
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| T |
21581405 |
gttgaaaataacaaactcacttcaattctctcataccaatttcggtaggctttttttattcttaaaaaaaatgaaaagtacaaaacaaattgaaacaatt |
21581504 |
T |
|
| Q |
158 |
tattttacaaatgtgataattagaaagataaaacttaattgcnnnnnnn-aggtgctttccgtgtgannnnnnnnacataaaatacacatacctagcaat |
256 |
Q |
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| T |
21581505 |
tattttacaaatgtgataattagaaagataaaacttaattgcctttttttaggtgttttccgtgtgattttttttacataaaatatacatacctagcaat |
21581604 |
T |
|
| Q |
257 |
aatttctcaaatacgcaaatttctaaaagtttattataagcacaaaaggtggattttatgtaaaaaaccacacaaaaagcatctatgaaatacatctatt |
356 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21581605 |
aatttctcaaatacacaaatttctaaaagtttattataagcacaaaaggtggattttatgtaaaaaaccacacaaaaagcatctatgatatacatctatt |
21581704 |
T |
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| Q |
357 |
ttcttaattaaaaagacagtatcatatgtgcactatataatgaacttgaagtttgctatatgaataatac |
426 |
Q |
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| T |
21581705 |
ttcttaattaaaaagacagtatcatatgtgcactatataatgaacttgaagtttgctatatgaataatac |
21581774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 335
Target Start/End: Complemental strand, 33355296 - 33355193
Alignment:
| Q |
232 |
acataaaatacacatacctagcaataatttctcaaatacgcaaatttctaaaagtttattataagcacaaaaggtggattttatgtaaaaaaccacacaa |
331 |
Q |
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| T |
33355296 |
acatcaaatactcataactaccaatgatttctcaaatccacaaatttctcaaagtttgttataagcacaacaagtgaattttatgtgaagaaccatacaa |
33355197 |
T |
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| Q |
332 |
aaag |
335 |
Q |
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|||| |
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| T |
33355196 |
aaag |
33355193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 36473272 - 36473324
Alignment:
| Q |
282 |
aaagtttattataagcacaaaaggtggattttatgtaaaaaaccacacaaaaa |
334 |
Q |
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| T |
36473272 |
aaagtttattataagcacaaaaaatgaatttaatgtgaagaaccacacaaaaa |
36473324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 43439837 - 43439898
Alignment:
| Q |
232 |
acataaaatacacatacctagcaataatttctcaaatacgcaaatttctaaaagtttattat |
293 |
Q |
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||||||||||| |||| ||| ||||||||||||||| | ||||||| ||||||||| |||| |
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| T |
43439837 |
acataaaatactcatatctactaataatttctcaaattcacaaatttataaaagtttgttat |
43439898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 341
Target Start/End: Complemental strand, 14171528 - 14171419
Alignment:
| Q |
232 |
acataaaatacacatacctagcaataatttctcaaatacgcaaatttctaaaagtttattataagcacaaaaggtggattttatgtaaaaaaccacacaa |
331 |
Q |
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||||||||||| ||| ||| |||| |||| |||||| ||||||||| ||||||| |||||| || |||| || |||||||| || |||||||||| |
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| T |
14171528 |
acataaaatactcatcactaacaatgatttttcaaatctacaaatttctcaaagtttgttataaacataaaaagtaaattttatgggaagaaccacacaa |
14171429 |
T |
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| Q |
332 |
aaagcatcta |
341 |
Q |
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||| |||||| |
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| T |
14171428 |
aaatcatcta |
14171419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 54126646 - 54126541
Alignment:
| Q |
232 |
acataaaatacacatacctagcaataatttctcaaatacgcaaatttctaaaagtttattataagcacaaaaggtggattttatgtaaaaaaccacacaa |
331 |
Q |
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||||||||||| ||| ||| |||| ||||||||||| | ||| ||||| ||||||| |||| |||||| ||| | ||||||||| || ||||||| | |
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| T |
54126646 |
acataaaatactaataactaccaatgatttctcaaatccacaattttcttaaagtttgttattagcacagaagttcaattttatgtgaagaaccacatga |
54126547 |
T |
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| Q |
332 |
aaagca |
337 |
Q |
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|||||| |
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| T |
54126546 |
aaagca |
54126541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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