View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_1 (Length: 851)
Name: NF15840_low_1
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 43557000 - 43556729
Alignment:
| Q |
17 |
cagagaaagggtgatgaacaagaagatattttacgtcgtggaagagaatgagaatctttgaaagatatgacatttgaagggtcgtcgatggtttgagaag |
116 |
Q |
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| T |
43557000 |
cagagaaagggtgatgaacaagaagatattttacgtcgtggaagagaatgagaatctttgaaagatatgatatctgaagggtcgtcgatggtttgagaag |
43556901 |
T |
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| Q |
117 |
gtttgggtttggaaatagggtgaaagggtagtacagtagtgttggaggagatggggggtgcaaatagtggtttttccataacatcagttaagtgttgttt |
216 |
Q |
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| T |
43556900 |
gtttgggtttggaaatagggtgaaagggtagtacagtagtgttggaggagatggggggtgcaaatagcggtttttccataacatcagttaagtgttgttt |
43556801 |
T |
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| Q |
217 |
ggttttgcaggatccaaatgaggatcggaacatgcgagagattctcattttgagacggttttggttttccat |
288 |
Q |
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| T |
43556800 |
ggttttgcaggatccaaatgaggatcggaacatgcgagagattctcattttgagacggttttggttttccat |
43556729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 448 - 740
Target Start/End: Complemental strand, 43556562 - 43556279
Alignment:
| Q |
448 |
cttaaatttatgctattttatttcttgtcgtttagtttgttgggtctgatttgtacagtgagtgaatcaatgagagaaattcgatttggtaaacagtgct |
547 |
Q |
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| T |
43556562 |
cttaaatttatgctattttatttcttgtcgtttagtttgttgggtctgatttgtacagtgagtgaatcaatgagagaaattcgatttggtaaacagtgct |
43556463 |
T |
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| Q |
548 |
aattgaccttcttctgcttctggggtttgcctttaaacgtgagtgaccatcgggtttttcattactctctatttagtacagtacgtgttatgtaagatga |
647 |
Q |
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| T |
43556462 |
aattgaccttcttctgcttctggggtttgcctttaaacgtgcgtgaccaccgggtttttcattactctctatttagtaa-----gtgttatgtaagatga |
43556368 |
T |
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| Q |
648 |
gaaattaagaattaagaaataaacaaataaggatagcaaaaataagagttttaaggcggcttcacattgtgtgtgcaccaaagatatatatgg |
740 |
Q |
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| T |
43556367 |
gaaattaagaattaagaaataaactaataaggatagcaaaaataagagttttaa---ggcttcacattgcgtgtgcgccaaa-atatatatgg |
43556279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 43556672 - 43556597
Alignment:
| Q |
336 |
agatagggtaatataaatgcatgagaaacagaaagtggaagtcttattaataatcatttactagtacaagtatttg |
411 |
Q |
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| T |
43556672 |
agatagggtgatataaatgcatgagaaacagaaagtggaagtcttattaataatcatttactagtactagtatttg |
43556597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 637 - 704
Target Start/End: Complemental strand, 16372957 - 16372890
Alignment:
| Q |
637 |
atgtaagatgagaaattaagaattaagaaataaacaaataaggatagcaaaaataagagttttaaggc |
704 |
Q |
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| T |
16372957 |
atgtaagatgagaaattaagaattatgaaataaacaaataaggataacaaaaataatagttttaaggc |
16372890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 637 - 704
Target Start/End: Original strand, 12641785 - 12641852
Alignment:
| Q |
637 |
atgtaagatgagaaattaagaattaagaaataaacaaataaggatagcaaaaataagagttttaaggc |
704 |
Q |
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| T |
12641785 |
atgtaagatgagaaattaagaattatgaaataaacaaataaggataacaaaaataatagttttaaggc |
12641852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 637 - 704
Target Start/End: Original strand, 17907055 - 17907126
Alignment:
| Q |
637 |
atgtaagatgagaaattaagaattaagaaataaacaaat----aaggatagcaaaaataagagttttaaggc |
704 |
Q |
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| T |
17907055 |
atgtaagatgagaaattaagaattatgaaataaacaaataaggaaggataacaaaaataatagttttaaggc |
17907126 |
T |
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