View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_10 (Length: 394)
Name: NF15840_low_10
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 42028483 - 42028861
Alignment:
| Q |
1 |
tcagtgcaactatagaaactccataatagcttctccataacaccatataatattattatttatgaaaaagagataaacatgcaagttttacttttcttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028483 |
tcagtgcaactatagaaactccataatagcttctccataacaccatataatattattatttatgaaaaagagataaacatgcaagttttacttttcttga |
42028582 |
T |
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| Q |
101 |
tttgacaactccctctcgctgccctaacacagttctgatacgcatttaagtcagtaaaaaacatctcagtgtgcagactttcctcttcctcctccttacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028583 |
tttgacaactccctctcgctgccctaacacagttctgatacgcatttaagtcagtaaaaaacatctcagtgtgcagactttcctcttcctcctccttacc |
42028682 |
T |
|
| Q |
201 |
acctttgtcctttactatatttctannnnnnnnnncacttacctaattataatagcttactccacaaacttagaaaattagaatcttttcacattttaaa |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028683 |
acctttgtcctttactatatttctattttttttttcacttacctaattataatagcttactccacaaacttagaaaattagaatcttttcacattttaaa |
42028782 |
T |
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| Q |
301 |
ttttggtgaaattgatgcttgtcaactgttttcatgatccatatattgatttgaagggagatccgatc-agaaaccact |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42028783 |
ttttggtgaaattgatgcttgtcaactgttttcatgatccatatattgatttgaagggagatccgatcaagaaaccact |
42028861 |
T |
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