View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15840_low_11 (Length: 357)

Name: NF15840_low_11
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15840_low_11
NF15840_low_11
[»] chr4 (27 HSPs)
chr4 (69-337)||(4734482-4734759)
chr4 (248-337)||(4731763-4731852)
chr4 (1-63)||(16820972-16821034)
chr4 (1-60)||(50619206-50619264)
chr4 (1-63)||(4089262-4089324)
chr4 (1-63)||(4268826-4268888)
chr4 (1-63)||(29591309-29591371)
chr4 (1-61)||(43944627-43944686)
chr4 (1-60)||(789537-789596)
chr4 (1-63)||(6164213-6164275)
chr4 (1-63)||(16536168-16536230)
chr4 (1-63)||(33108677-33108739)
chr4 (1-43)||(36395219-36395261)
chr4 (1-61)||(18067885-18067945)
chr4 (7-63)||(53003960-53004016)
chr4 (1-63)||(3783502-3783567)
chr4 (1-44)||(32217164-32217207)
chr4 (1-63)||(5091616-5091676)
chr4 (1-63)||(7769058-7769120)
chr4 (1-63)||(12356364-12356426)
chr4 (1-43)||(43202407-43202449)
chr4 (1-63)||(50603348-50603410)
chr4 (1-63)||(54897428-54897490)
chr4 (1-34)||(30387167-30387200)
chr4 (1-42)||(31517286-31517327)
chr4 (11-63)||(54054659-54054711)
chr4 (7-63)||(54655881-54655936)
[»] chr3 (25 HSPs)
chr3 (1-63)||(39074538-39074600)
chr3 (1-63)||(48725391-48725453)
chr3 (1-63)||(10617288-10617350)
chr3 (1-61)||(33141005-33141065)
chr3 (1-61)||(42548215-42548274)
chr3 (1-60)||(49893451-49893510)
chr3 (1-63)||(272340-272402)
chr3 (1-63)||(6842739-6842801)
chr3 (1-63)||(42964253-42964315)
chr3 (1-63)||(43786991-43787053)
chr3 (1-63)||(46352754-46352816)
chr3 (1-63)||(52520801-52520863)
chr3 (1-60)||(858709-858768)
chr3 (1-44)||(40362603-40362646)
chr3 (1-43)||(2505469-2505511)
chr3 (1-63)||(4168303-4168365)
chr3 (1-63)||(11308215-11308276)
chr3 (1-63)||(24488486-24488548)
chr3 (1-62)||(41304123-41304184)
chr3 (1-63)||(2938044-2938106)
chr3 (1-63)||(7468531-7468591)
chr3 (328-357)||(46845507-46845536)
chr3 (1-42)||(49529291-49529332)
chr3 (1-61)||(22249006-22249066)
chr3 (1-41)||(28139429-28139469)
[»] chr1 (34 HSPs)
chr1 (1-63)||(51065752-51065814)
chr1 (1-59)||(19010695-19010753)
chr1 (1-63)||(5694441-5694503)
chr1 (1-63)||(38162970-38163032)
chr1 (1-63)||(47010113-47010175)
chr1 (1-63)||(50128176-50128238)
chr1 (1-62)||(12072067-12072128)
chr1 (1-61)||(15227859-15227919)
chr1 (4-63)||(29657894-29657953)
chr1 (1-63)||(9266732-9266794)
chr1 (1-63)||(18043282-18043344)
chr1 (1-63)||(30294385-30294447)
chr1 (1-63)||(41730428-41730490)
chr1 (1-63)||(45449248-45449310)
chr1 (1-63)||(48383115-48383177)
chr1 (1-62)||(42769995-42770056)
chr1 (1-46)||(45431398-45431443)
chr1 (1-60)||(24178470-24178529)
chr1 (1-39)||(6770457-6770495)
chr1 (1-63)||(13961331-13961393)
chr1 (1-63)||(19031819-19031881)
chr1 (1-61)||(52431700-52431761)
chr1 (1-41)||(12307037-12307077)
chr1 (1-60)||(3784720-3784779)
chr1 (16-63)||(29210529-29210576)
chr1 (1-44)||(30657722-30657765)
chr1 (1-39)||(3097779-3097817)
chr1 (1-63)||(14350283-14350343)
chr1 (1-47)||(35985641-35985687)
chr1 (7-44)||(47532694-47532731)
chr1 (1-42)||(51368810-51368851)
chr1 (1-61)||(11796977-11797036)
chr1 (3-35)||(26228300-26228332)
chr1 (1-61)||(28725911-28725971)
[»] chr8 (27 HSPs)
chr8 (1-63)||(9063056-9063118)
chr8 (1-63)||(13643131-13643193)
chr8 (1-63)||(13743556-13743618)
chr8 (1-63)||(34228802-34228864)
chr8 (1-63)||(4537748-4537810)
chr8 (7-63)||(3930237-3930293)
chr8 (1-60)||(2805267-2805326)
chr8 (1-63)||(168586-168648)
chr8 (1-43)||(27988523-27988565)
chr8 (1-43)||(28045825-28045867)
chr8 (1-63)||(30675577-30675638)
chr8 (3-39)||(4648316-4648352)
chr8 (1-60)||(42034988-42035047)
chr8 (1-63)||(16394065-16394127)
chr8 (1-63)||(16888548-16888610)
chr8 (1-63)||(16890484-16890546)
chr8 (1-63)||(20831557-20831619)
chr8 (1-62)||(9253907-9253968)
chr8 (1-40)||(21595966-21596005)
chr8 (1-40)||(29444167-29444206)
chr8 (1-44)||(33357152-33357195)
chr8 (1-63)||(39406962-39407022)
chr8 (1-63)||(9537828-9537890)
chr8 (1-63)||(28626888-28626949)
chr8 (1-63)||(32114029-32114091)
chr8 (1-61)||(29235355-29235415)
chr8 (325-357)||(44580606-44580638)
[»] chr7 (22 HSPs)
chr7 (1-63)||(24438597-24438659)
chr7 (1-63)||(4628686-4628748)
chr7 (1-63)||(34606381-34606443)
chr7 (1-62)||(13064881-13064942)
chr7 (1-63)||(12218441-12218502)
chr7 (1-63)||(24798407-24798469)
chr7 (1-61)||(42044300-42044359)
chr7 (1-40)||(29993514-29993553)
chr7 (1-44)||(45045890-45045933)
chr7 (1-63)||(525080-525141)
chr7 (1-63)||(5239405-5239467)
chr7 (1-63)||(28588029-28588091)
chr7 (1-63)||(34333403-34333465)
chr7 (1-42)||(47657098-47657139)
chr7 (1-37)||(47083175-47083211)
chr7 (1-36)||(11686353-11686388)
chr7 (1-44)||(23357733-23357776)
chr7 (1-44)||(47839612-47839655)
chr7 (1-43)||(7689224-7689266)
chr7 (1-62)||(1737100-1737160)
chr7 (1-42)||(33636572-33636613)
chr7 (1-64)||(18486081-18486144)
[»] chr6 (24 HSPs)
chr6 (1-63)||(12525839-12525901)
chr6 (1-63)||(32929512-32929574)
chr6 (1-63)||(392216-392278)
chr6 (1-63)||(1391182-1391244)
chr6 (3-61)||(1840253-1840311)
chr6 (1-63)||(2581072-2581134)
chr6 (1-63)||(3515886-3515948)
chr6 (1-59)||(11115106-11115163)
chr6 (1-63)||(29978352-29978413)
chr6 (1-62)||(32985198-32985259)
chr6 (1-61)||(2350772-2350832)
chr6 (1-63)||(4215815-4215877)
chr6 (1-44)||(35044009-35044052)
chr6 (1-43)||(13416983-13417025)
chr6 (1-63)||(23402258-23402320)
chr6 (1-63)||(25165417-25165479)
chr6 (1-61)||(7851165-7851225)
chr6 (1-61)||(26467130-26467190)
chr6 (1-61)||(27433612-27433672)
chr6 (1-63)||(18276616-18276681)
chr6 (1-44)||(29451138-29451181)
chr6 (1-43)||(5323520-5323562)
chr6 (26-63)||(21878357-21878394)
chr6 (1-61)||(34706841-34706901)
[»] chr5 (16 HSPs)
chr5 (1-63)||(11957971-11958033)
chr5 (1-63)||(34650837-34650899)
chr5 (1-63)||(35132641-35132703)
chr5 (1-61)||(6283682-6283742)
chr5 (1-44)||(10956071-10956114)
chr5 (1-63)||(8787459-8787521)
chr5 (1-63)||(13661928-13661990)
chr5 (1-63)||(40564408-40564470)
chr5 (1-49)||(12506416-12506464)
chr5 (1-61)||(31467840-31467900)
chr5 (9-44)||(10955974-10956009)
chr5 (1-44)||(11846192-11846235)
chr5 (5-39)||(2619596-2619630)
chr5 (1-63)||(10054357-10054419)
chr5 (18-63)||(10070086-10070131)
chr5 (1-41)||(20175347-20175387)
[»] chr2 (23 HSPs)
chr2 (1-63)||(20553051-20553113)
chr2 (1-63)||(30486330-30486392)
chr2 (1-61)||(1859282-1859342)
chr2 (1-63)||(4381915-4381977)
chr2 (1-63)||(22068324-22068386)
chr2 (1-63)||(31438766-31438828)
chr2 (1-63)||(32360873-32360935)
chr2 (1-44)||(6580309-6580352)
chr2 (1-63)||(22567722-22567784)
chr2 (1-63)||(27856400-27856462)
chr2 (1-63)||(28601086-28601148)
chr2 (1-43)||(34442556-34442598)
chr2 (1-63)||(44588022-44588084)
chr2 (1-42)||(26387089-26387130)
chr2 (1-63)||(4022483-4022545)
chr2 (1-63)||(13574034-13574095)
chr2 (1-63)||(31390132-31390194)
chr2 (1-62)||(8969412-8969473)
chr2 (1-41)||(22887870-22887910)
chr2 (1-37)||(38590904-38590940)
chr2 (1-40)||(25782860-25782899)
chr2 (1-42)||(35851776-35851817)
chr2 (1-61)||(3668119-3668179)
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-44)||(15016-15059)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-63)||(10830-10892)
[»] scaffold0188 (1 HSPs)
scaffold0188 (1-63)||(6114-6176)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-62)||(116324-116385)
[»] scaffold0264 (1 HSPs)
scaffold0264 (1-61)||(23081-23141)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-61)||(53691-53751)
[»] scaffold0524 (1 HSPs)
scaffold0524 (1-60)||(945-1004)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-40)||(41039-41078)
[»] scaffold0014 (1 HSPs)
scaffold0014 (5-44)||(68313-68352)
[»] scaffold0045 (1 HSPs)
scaffold0045 (7-63)||(53361-53417)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 69 - 337
Target Start/End: Original strand, 4734482 - 4734759
Alignment:
Q  69 ttattatcttgatgggtctactgagtaatggccattttataattattccatataacattttaaatgtgtcctttgagatttaattatgaacccagaggtt 168  Q
    ||||||| ||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||     
T  4734482 ttattatattgatgaatctaatgagtaatggccattttataattattccatataacattttaaatgtgtcccttgagatttaattatgaa-ccagaggtc 4734580  T
Q  169 gcatgcaacgacaataatgaaccttacactttggaacaa----attcatacaaataagaaat----------aattatttttgcac-ttgtggtttgctg 253  Q
     |||||||||||||||| |||||||||||||||||||||    |||||||||||||||||||          ||||||| |||||| |||||| ||||||    
T  4734581 acatgcaacgacaataaggaaccttacactttggaacaagaggattcatacaaataagaaatctacattcaaaattattcttgcactttgtgg-ttgctg 4734679  T
Q  254 taatataaaaaataagaaacaaatatgactgtaagggatggaatattttgtttaaaagataaacaagaaagttaaaaaagatac 337  Q
    |||||||||||||    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4734680 taatataaaaaat----aataaatatgactgtaagggatgtaatattttgtttaaaagataaacaagaaagttaaaaaagatac 4734759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 4731763 - 4731852
Alignment:
Q  248 ttgctgtaatataaaaaataagaaacaaatatgactgtaagggatggaatattttgtttaaaagataaacaagaaagttaaaaaagatac 337  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||| |  |||||||||||||||||||||||| ||||    
T  4731763 ttgctataatataaaaaataagaaacaaatattaatgtaagggatgaaatattttgtatttaagataaacaagaaagttaaaaaaaatac 4731852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16820972 - 16821034
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  16820972 ttatggtaataatttccttttatggtatgcttaaccagtgccccgggggcaccggttagcagg 16821034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 50619206 - 50619264
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagc 60  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||  |||||||||||    
T  50619206 ttatggtaataattcccttttatggtatgcttaaccagtg-cccaggggcaccggttagc 50619264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4089262 - 4089324
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||||  |||| |||||||||    
T  4089262 ttatggtaataattctcttttatggtatgtttaaccagtgccccaggggcaccagttagcagg 4089324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4268888 - 4268826
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| |||| ||||||||||||||  |  ||||||||||||||    
T  4268888 ttatggtaataattcccttttatggtatgattaaccagtgccccgagggcaccggttagcagg 4268826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29591309 - 29591371
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| |||||||||| |||||||| ||  ||||||||||||||    
T  29591309 ttatggtaataattaccttttatggtatgcttaactagtgccccgggggcaccggttagcagg 29591371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43944627 - 43944686
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||  ||||||||||||    
T  43944627 ttatggtaataattcccttgtatggtatgcttaaccagtgcccgagg-gcaccggttagca 43944686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 789596 - 789537
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagc 60  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||   |||||||||||    
T  789596 ttatggtaataattcccttttatggtatgcttaaccagtagcccagaggcaccggttagc 789537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6164213 - 6164275
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc-aggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||||||||||||| |||| |||| ||||||||||||||    
T  6164213 ttatggtaataattctcttttatggtatgcttaaccagtaccccgagga-caccggttagcagg 6164275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16536168 - 16536230
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||  ||||||| ||| ||||||||||||||| ||  ||||||||||||||    
T  16536168 ttatggtaataattctattttatggtattcttaaccagtgccccgggggcaccggttagcagg 16536230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33108739 - 33108677
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||| |   ||||||||||||||    
T  33108739 ttatggtaataattcctttttatggtatgcttaacccgtgccccggaggcaccggttagcagg 33108677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36395219 - 36395261
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccc 43  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  36395219 ttatgataataattcccttttatggtatgcttaaccagtgccc 36395261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18067945 - 18067885
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||| |||| |||||| || |||| ||  ||||||||||||    
T  18067945 ttatggtaataattcccttttatggtatgtttaacccgttccccgggggcaccggttagca 18067885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 53004016 - 53003960
Alignment:
Q  7 taataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||| |||||||||||||||||| ||||| ||| ||  ||||||||||||||    
T  53004016 taataattctcttttatgatatgcttaatcagtgtccccgggacaccggttagcagg 53003960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3783567 - 3783502
Alignment:
Q  1 ttatggtaataattcccttttatgatatgctta---accagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||   || |||||||| ||| ||||||||| ||||    
T  3783567 ttatggtaataattcccttttatggtatgcttaagtactagtgccccgggagcaccggttaacagg 3783502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32217164 - 32217207
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||    
T  32217164 ttatgataataattcccttttatggtatgcttaacctgtgcccc 32217207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5091676 - 5091616
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||| ||||||||||||||||||| |||||||||||||||  || ||| ||||||||||||||    
T  5091676 ttatagtaataattcccttttatg-tatgcttaaccagtg-tccgggagcaccggttagcagg 5091616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7769058 - 7769120
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| ||||||||  || ||||||| ||||||| ||  ||||||||||||||    
T  7769058 ttatggtaataattctcttttatggcatacttaacccgtgccccgggggcaccggttagcagg 7769120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12356364 - 12356426
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| ||||||||| |||||||| |||||||||||||||  || ||  ||||||||||||||    
T  12356364 ttatgataataattctcttttatggtatgcttaaccagtgttccgggggcaccggttagcagg 12356426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43202449 - 43202407
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccc 43  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  43202449 ttatggtaataattctcttttatggtaagcttaaccagtgccc 43202407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 50603348 - 50603410
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| ||||||||| |||||||| |||||||||||||| ||||  || |||| |||||||||    
T  50603348 ttatgataataattctcttttatggtatgcttaaccagtaccccgagaacaccagttagcagg 50603410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 54897428 - 54897490
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| |||| |||||||||| ||| |   ||||||||||||||    
T  54897428 ttatggtaataatttccttttatggtatgtttaaccagtgtcccggaggcaccggttagcagg 54897490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30387200 - 30387167
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaa 34  Q
    |||||||||||||||| |||||||||||||||||    
T  30387200 ttatggtaataattcctttttatgatatgcttaa 30387167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31517286 - 31517327
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcc 42  Q
    ||||||||||||||| ||| |||| |||||||||||||||||    
T  31517286 ttatggtaataattctcttatatggtatgcttaaccagtgcc 31517327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 54054659 - 54054711
Alignment:
Q  11 aattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||| ||||||||| ||||||||||||||||||| ||  |||||||| |||||    
T  54054659 aatttccttttatggtatgcttaaccagtgccccgggggcaccggttggcagg 54054711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 54655936 - 54655881
Alignment:
Q  7 taataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||| || ||||||||||||||||||||| ||| ||  ||||||||||||||    
T  54655936 taataattctctcttatgatatgcttaaccagtgtccc-ggggcaccggttagcagg 54655881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39074538 - 39074600
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  39074538 ttatggtaataattcccttttatggtatgcttaaccagtgccccaggggcaccggttagcagg 39074600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 48725391 - 48725453
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||    
T  48725391 ttatggtaataattcccttttatggtatgcttaaccagtgccccgggaccacgggttagcagg 48725453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10617350 - 10617288
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||  ||||||||||||||    
T  10617350 ttatggtaataattcccttttatggtatgcttaacccgtgccccgggggcaccggttagcagg 10617288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33141005 - 33141065
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||||||||||||| |||| |||| | | ||||||||||||    
T  33141005 ttatggtaataattcccttttatgatatgcttaatcagtaccccggaagcaccggttagca 33141065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42548215 - 42548274
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||||    
T  42548215 ttatggtaataattcccttttatggtatgcttaaccagtgctccggga-caccggttagca 42548274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49893451 - 49893510
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagc 60  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||  |||||||||||    
T  49893451 ttatggtaataattcccttttatggtatgcttaatcagtgccccgggggcaccggttagc 49893510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 272340 - 272402
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||| | ||||||| ||  ||||||||||||||    
T  272340 ttatggtaataattcccttttatggtatgcttaatcggtgccccgggggcaccggttagcagg 272402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6842739 - 6842801
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||  || |||||||||||    
T  6842739 ttatggtaataattcccatttatggtatgcttaaccagtgccccgggggcagcggttagcagg 6842801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42964315 - 42964253
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||| |||||||||| |||||||||||||||||||||||| | ||||  ||||||||||||||    
T  42964315 ttatagtaataattcacttttatgatatgcttaaccagtgtctcagggacaccggttagcagg 42964253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43786991 - 43787053
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||  ||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  43786991 ttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcagg 43787053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 46352754 - 46352816
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |   ||||||||||||||    
T  46352754 ttatggtaataattcccttttatggtatgcttaacccgtgccccggaggcaccggttagcagg 46352816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 52520801 - 52520863
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||  ||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  52520801 ttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcagg 52520863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 858709 - 858768
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagc 60  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| ||  |||||||||||    
T  858709 ttatggtaataatttccttttatggtatgcttaacccgtgccccgggggcaccggttagc 858768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 40362646 - 40362603
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  40362646 ttatggtaataattctcttttatggtatgcttaaccagtgcccc 40362603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2505469 - 2505511
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccc 43  Q
    |||||||||||||||||||||||| |||| |||||||||||||    
T  2505469 ttatggtaataattcccttttatggtatgtttaaccagtgccc 2505511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4168303 - 4168365
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| ||||||||||| || |||| ||  ||||||||||||||    
T  4168303 ttatggtaataattctcttttatggtatgcttaacccgtaccccgggggcaccggttagcagg 4168365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11308276 - 11308215
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||||  ||||| ||||||||    
T  11308276 ttatggtaataattcc-ttttatggtatgcttaaccaatgccccaggggcaccgattagcagg 11308215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24488486 - 24488548
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| ||||||||||||||| ||| ||||| || ||| ||||||||| ||||    
T  24488486 ttatggtaataattctcttttatgatatgctgaactagtgctccgggagcaccggttaacagg 24488548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41304123 - 41304184
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcag 62  Q
    |||||||||||||| ||||||||| |||||||||||| |||||| |   |||||||||||||    
T  41304123 ttatggtaataatttccttttatggtatgcttaaccaatgccccggagacaccggttagcag 41304184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2938106 - 2938044
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||||||||| ||| ||||  |  ||||||||||||||    
T  2938106 ttatggtaataattcacttttatggtatgcttaacgagtaccccgagggcaccggttagcagg 2938044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7468531 - 7468591
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| ||||||| |||||||||| ||||||||| ||||||||| ||| ||||||||||||||    
T  7468531 ttatgataataat-cccttttatggtatgcttaatcagtgcccc-ggagcaccggttagcagg 7468591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 357
Target Start/End: Complemental strand, 46845536 - 46845507
Alignment:
Q  328 aaaaagatactacctccgtccctaattata 357  Q
    ||||||||||||||||||||||||||||||    
T  46845536 aaaaagatactacctccgtccctaattata 46845507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49529332 - 49529291
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcc 42  Q
    |||||||||||||| ||||||||| |||| ||||||||||||    
T  49529332 ttatggtaataatttccttttatggtatgtttaaccagtgcc 49529291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22249006 - 22249066
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||  ||||||| |||| | ||| || | ||||||||||||    
T  22249006 ttatggtaataattcccttttatagtatgcttgaccaataccctagaagcaccggttagca 22249066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28139429 - 28139469
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgc 41  Q
    |||||||||||||||||||||||| ||| ||||| ||||||    
T  28139429 ttatggtaataattcccttttatggtatacttaaacagtgc 28139469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51065814 - 51065752
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  51065814 ttatggtaataattcccttttatggtatgcttaaccagtgccccaggggcaccggttagcagg 51065752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19010753 - 19010695
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttag 59  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  19010753 ttatggtaataattcccttttatggtatgattaaccagtgccccaggaacaccggttag 19010695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5694441 - 5694503
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||  ||||||||||||||    
T  5694441 ttatggtaataattcccttttatggtatgcttaaccagtgctccgggggcaccggttagcagg 5694503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38162970 - 38163032
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||  ||||||||||||||    
T  38162970 ttatggtaataattcccttttatggtatgcttaacccgtgccccgggggcaccggttagcagg 38163032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 47010113 - 47010175
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||  ||||||||||||||    
T  47010113 ttatggtaataattctcttttatggtatgcttaaccagtgctccaggggcaccggttagcagg 47010175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 50128238 - 50128176
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||| | ||||||||||||||    
T  50128238 ttatggtaataattctcttttatggtatgcttaaccagtgtcccagaaacaccggttagcagg 50128176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12072128 - 12072067
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcag 62  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| ||  |||||||||||||    
T  12072128 ttatggtaataattcctttttatggtatgcttaaccagtgccccgggggcaccggttagcag 12072067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15227859 - 15227919
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |   ||||||||||||    
T  15227859 ttatggtaataattcccttttatggtatgcttaaccagtgccccggaggcaccggttagca 15227919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 29657894 - 29657953
Alignment:
Q  4 tggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||  ||||||||||||||    
T  29657894 tggtaataattcccttttatggtatgcttaaccagtgccctgggggcaccggttagcagg 29657953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9266794 - 9266732
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| ||| |||||||||||| |||| | ||||||||||||||    
T  9266794 ttatggtaataattcgcttttatggtatacttaaccagtgctccagaagcaccggttagcagg 9266732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 18043282 - 18043344
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||  ||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  18043282 ttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcagg 18043344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 30294447 - 30294385
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||| |||| || ||  ||||||||||||||    
T  30294447 ttatggtaataattcccttttatggtatgcttaacctgtgctccggggacaccggttagcagg 30294385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41730428 - 41730490
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| |||||||||||||||||| |||||||||| |||||||||| | ||| ||||||||||    
T  41730428 ttatgataataattcccttttatggtatgcttaacaagtgccccagaagcactggttagcagg 41730490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45449310 - 45449248
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| |||| |||||||||||||||||  || |||||||||||    
T  45449310 ttatggtaataattgccttttatggtatgtttaaccagtgccccaggggcatcggttagcagg 45449248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 48383177 - 48383115
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||  ||| ||||||||||    
T  48383177 ttatggtaataattcccttttatggtatgcttaaccaatgcctcaggggcactggttagcagg 48383115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42770056 - 42769995
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcag 62  Q
    |||||||||||||||  ||||||| ||||||||||||||||||| ||  |||||||||||||    
T  42770056 ttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcag 42769995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45431398 - 45431443
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccag 46  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||    
T  45431398 ttatggtaataattctcttttatgatatacttaaccagtgccccag 45431443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24178529 - 24178470
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagc 60  Q
    |||||||||||||| | ||||||| ||||||||||||||||||| ||  |||||||||||    
T  24178529 ttatggtaataatttcattttatggtatgcttaaccagtgccccgggggcaccggttagc 24178470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6770457 - 6770495
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagt 39  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  6770457 ttatgataataattcccttttatgatatgcttaaccagt 6770495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13961331 - 13961393
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||  |||||||| |||||||||||||||| ||| |  ||||||||||||||    
T  13961331 ttatggtaataattttcttttatggtatgcttaaccagtgctccaagggcaccggttagcagg 13961393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19031881 - 19031819
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||||||||||||||| || |||| |   ||||||||||||||    
T  19031881 ttatggtaataatttccttttatgatatgcttaacccgtaccccggagacaccggttagcagg 19031819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 52431700 - 52431761
Alignment:
Q  1 ttatggtaataattcccttttat-gatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||| |||||| | | ||||||||||||||||||||||  ||||||||||||    
T  52431700 ttatggtaataatttcctttttttggtatgcttaaccagtgccccagggacaccggttagca 52431761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12307037 - 12307077
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgc 41  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  12307037 ttatggtaataattctcttttatggtatgcttaaccagtgc 12307077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3784779 - 3784720
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagc 60  Q
    |||||||||||||| ||||||||| ||||||||||| ||| ||| ||  |||||||||||    
T  3784779 ttatggtaataatttccttttatggtatgcttaacccgtgtcccgggggcaccggttagc 3784720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 29210529 - 29210576
Alignment:
Q  16 ccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  29210529 ccttttatggtatgcttaaccagtgccccgggggcaccggttagcagg 29210576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30657722 - 30657765
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||    
T  30657722 ttatgataataattcccttttatggtatgcttaaccagtacccc 30657765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3097779 - 3097817
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagt 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  3097779 ttatggtaataatttccttttatggtatgcttaaccagt 3097817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14350343 - 14350283
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||  ||| ||||||||||||||||||| ||  ||||||||||||||    
T  14350343 ttatggtaataattccctta-atggtatgcttaaccagtgcccc-ggggcaccggttagcagg 14350283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35985687 - 35985641
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccagg 47  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||||    
T  35985687 ttatggtaataattcccatttatagtatacttaaccagtgccccagg 35985641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 47532731 - 47532694
Alignment:
Q  7 taataattcccttttatgatatgcttaaccagtgcccc 44  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  47532731 taataattcccttttatggtatgcttaaccaatgcccc 47532694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51368851 - 51368810
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcc 42  Q
    |||| ||||||||||| ||||||| |||||||||||||||||    
T  51368851 ttatagtaataattccattttatggtatgcttaaccagtgcc 51368810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 11797036 - 11796977
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||| | |||||| || ||| |||||| |||||||||||| ||||||||||||    
T  11797036 ttatggtaataacttccttttttggtatccttaactagtgccccagga-caccggttagca 11796977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 26228300 - 26228332
Alignment:
Q  3 atggtaataattcccttttatgatatgcttaac 35  Q
    |||||||||||||||||||||| ||||||||||    
T  26228300 atggtaataattcccttttatggtatgcttaac 26228332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28725971 - 28725911
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    ||||||||| |||| |||||| |  ||||||||||||||||||| ||  ||||||||||||    
T  28725971 ttatggtaagaatttccttttttcgtatgcttaaccagtgccccggggacaccggttagca 28725911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9063118 - 9063056
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||||    
T  9063118 ttatggtaataattcccttttgtgatatgcttaaccagtgccccggaagcaccggttagcagg 9063056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13643131 - 13643193
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||    
T  13643131 ttatggtaataattctcttttatggtatgcttaaccagtgccctaggagcaccggttagcagg 13643193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13743556 - 13743618
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||    
T  13743556 ttatggtaataattctcttttatggtatgcttaaccagtgccctaggagcaccggttagcagg 13743618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34228802 - 34228864
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  34228802 ttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagg 34228864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4537810 - 4537748
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||   ||||||||||||||    
T  4537810 ttatggtaataattcccttttatggtatgcttaacctgtgccccagaggcaccggttagcagg 4537748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 3930293 - 3930237
Alignment:
Q  7 taataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||| ||||||||||||||||||||||||||||||||| || || ||||||||    
T  3930293 taataatttccttttatgatatgcttaaccagtgccccaggagcatcgattagcagg 3930237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2805326 - 2805267
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagc 60  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |   |||||||||||    
T  2805326 ttatggtaataattcccttttatggtatgcttaaccagtgccccggaggcaccggttagc 2805267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 168586 - 168648
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||| ||||||| |||||||||||| |||||| ||  ||||||||||||||    
T  168586 ttatggtaataattccattttatggtatgcttaaccaatgccccgggggcaccggttagcagg 168648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27988565 - 27988523
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccc 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  27988565 ttatggtaataattcccttttatggtatgcttaaccagtgccc 27988523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28045867 - 28045825
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccc 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  28045867 ttatggtaataattcccttttatggtatgcttaaccagtgccc 28045825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 30675638 - 30675577
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  30675638 ttatggtaataattcc-ttttatggtatgcttaaccagtgccccggggacaccggttagcagg 30675577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 4648316 - 4648352
Alignment:
Q  3 atggtaataattcccttttatgatatgcttaaccagt 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  4648316 atggtaataattcccttttatgatatgcttaaccagt 4648352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42035047 - 42034988
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagc 60  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||   |||||||||||    
T  42035047 ttatggtaataattcccttttatggtatgcttaacacgtgccccagagacaccggttagc 42034988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16394127 - 16394065
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| ||||||||| |||||||| |||||||||||| |||||| ||  ||||||||||||||    
T  16394127 ttatgctaataattctcttttatggtatgcttaaccaatgccccgggggcaccggttagcagg 16394065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16888610 - 16888548
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| ||||| || |||||||||||| |||||| ||  ||||||||||||||    
T  16888610 ttatggtaataattctcttttgtggtatgcttaaccaatgccccgggggcaccggttagcagg 16888548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16890546 - 16890484
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||| ||||||| ||||||||||| ||||| | ||  ||||||||||||||    
T  16890546 ttatggtaataattcctttttatggtatgcttaaccggtgcctccggggcaccggttagcagg 16890484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20831619 - 20831557
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| ||||||||| |||||| || ||  ||||||||||||||    
T  20831619 ttatggtaataattctcttttatggtatgcttaatcagtgctcccgggacaccggttagcagg 20831557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9253968 - 9253907
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcag 62  Q
    |||| |||||||||| |||||||| |||||||||||| || ||||||  |||||||||||||    
T  9253968 ttatagtaataattctcttttatggtatgcttaaccaatgtcccaggggcaccggttagcag 9253907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21595966 - 21596005
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtg 40  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  21595966 ttatggtattaattcccttttatggtatgcttaaccagtg 21596005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29444206 - 29444167
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtg 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  29444206 ttatggtaataattcccttttatggtatgtttaaccagtg 29444167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33357195 - 33357152
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||    
T  33357195 ttatggtaataattctcttttatggtatgcttaactagtgcccc 33357152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39406962 - 39407022
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| |||||||||||||||||| |||| ||||| |||||||| ||  ||||||||||||||    
T  39406962 ttatgataataattcccttttatggtatgtttaactagtgccccggg--caccggttagcagg 39407022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9537890 - 9537828
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||| ||||||||| ||||||||| ||||||||||||||| ||| |   ||||||||||||||    
T  9537890 ttatagtaataatttccttttatggtatgcttaaccagtgtcccggagacaccggttagcagg 9537828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28626888 - 28626949
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| |||||||||||||||||| ||||||||| |||||  || ||| ||||||||||||||    
T  28626888 ttatgataataattcccttttatggtatgcttaatcagtg-tccgggagcaccggttagcagg 28626949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32114029 - 32114091
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| |||||||||||||||||  |||| ||||||||||| ||||   ||||||||||||||    
T  32114029 ttatgataataattcccttttatagtatgtttaaccagtgctccagagccaccggttagcagg 32114091  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29235355 - 29235415
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    ||||| |||||||| ||||||||   |||||||||||||| ||| ||| ||||||||||||    
T  29235355 ttatgataataatttccttttataggatgcttaaccagtgtcccgggaacaccggttagca 29235415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 44580606 - 44580638
Alignment:
Q  325 ttaaaaaagatactacctccgtccctaattata 357  Q
    |||||| ||||||||||||||||||||||||||    
T  44580606 ttaaaagagatactacctccgtccctaattata 44580638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24438597 - 24438659
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  24438597 ttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagg 24438659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4628686 - 4628748
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| |||||||||||||||||  |||  ||||||||||||||    
T  4628686 ttatggtaataattcccttttatggtatgcttaaccagtgccttaggggcaccggttagcagg 4628748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34606381 - 34606443
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| ||| ||||||||||||||    
T  34606381 ttatggtaataattaccttttatggtatgcttaacccgtgccccgggagcaccggttagcagg 34606443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13064942 - 13064881
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcag 62  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||  |||||||||||||    
T  13064942 ttatggtaataattcccttttatggtatgcttaaccagtgctctaggggcaccggttagcag 13064881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12218502 - 12218441
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||| |||||||||||||| ||| ||||||||||||||    
T  12218502 ttatggtaataattctcttttatggtatgtttaaccagtgccccggga-caccggttagcagg 12218441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24798469 - 24798407
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||  ||||||||||||||||||| ||  |||| |||||||||    
T  24798469 ttatggtaataattcccttttatagtatgcttaaccagtgccccgggggcaccagttagcagg 24798407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42044359 - 42044300
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||    
T  42044359 ttatggtaataattcccttttatggtatgtttaaccagtgcccc-ggggcaccggttagca 42044300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29993553 - 29993514
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  29993553 ttatggtaataattcccttttatggtatgcttaaccagtg 29993514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45045890 - 45045933
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    ||||| |||||||||||||||||| |||||||||||||||||||    
T  45045890 ttatgataataattcccttttatggtatgcttaaccagtgcccc 45045933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 525141 - 525080
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| ||||||||||||| ||||||||| | || ||| ||||||||||||||    
T  525141 ttatggtaataattctcttttatgatatgtttaaccagtactcc-ggagcaccggttagcagg 525080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5239405 - 5239467
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| ||  ||| ||||||||||    
T  5239405 ttatggtaataattcccttttatggtatgcttaacttgtgcccccggggcactggttagcagg 5239467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28588029 - 28588091
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| |||| ||||||| | |||| ||| || |||||||||||    
T  28588029 ttatggtaataattcccttttatggtatgtttaaccaataccccgggaacatcggttagcagg 28588091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34333403 - 34333465
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||| ||||||| |||| |||||| ||||||| ||  ||||||||||||||    
T  34333403 ttatggtaataattcctttttatggtatgtttaacccgtgccccgggggcaccggttagcagg 34333465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 47657098 - 47657139
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcc 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  47657098 ttatggtaataattcccttttatggtatgcttaatcagtgcc 47657139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47083175 - 47083211
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaacca 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  47083175 ttatggtaataattcccttttatgatatgtttaacca 47083211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 11686388 - 11686353
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaacc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  11686388 ttatggtaataattctcttttatgatatgcttaacc 11686353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23357776 - 23357733
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||    
T  23357776 ttatgataataattctcttctatgatatgcttaaccagtgcccc 23357733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47839612 - 47839655
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    |||||||||||||||||||||||| ||||  |||||||||||||    
T  47839612 ttatggtaataattcccttttatggtatgaataaccagtgcccc 47839655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7689266 - 7689224
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccc 43  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||    
T  7689266 ttatggtaataattctcttttatggtatacttaaccagtgccc 7689224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1737100 - 1737160
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcag 62  Q
    ||||| |||||||||  ||||||| ||||||||||||||||||| | | |||||||||||||    
T  1737100 ttatgataataattca-ttttatggtatgcttaaccagtgccccggaagcaccggttagcag 1737160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33636572 - 33636613
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcc 42  Q
    |||||||||||||||  ||||||| |||||||||||||||||    
T  33636572 ttatggtaataattctattttatggtatgcttaaccagtgcc 33636613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 18486081 - 18486144
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc-aggatcaccggttagcaggg 64  Q
    |||||||||||||| | ||||||| ||||||||||| ||||||| | || |||||||||||||||    
T  18486081 ttatggtaataatttcattttatggtatgcttaacccgtgccccgaaga-caccggttagcaggg 18486144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12525839 - 12525901
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||    
T  12525839 ttatggtaataattcccttttatgatatgcttaactagtgccccagggataccggttagcagg 12525901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32929574 - 32929512
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  32929574 ttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagg 32929512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 392216 - 392278
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  392216 ttatggtaataattctcttttatggtatgcttaaccagtgccccgggggcaccggttagcagg 392278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1391244 - 1391182
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| |||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||    
T  1391244 ttatgataataattcccttttatggtatgcttaaccagtgttccaggaacaccggttagcagg 1391182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 1840311 - 1840253
Alignment:
Q  3 atggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    ||||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||    
T  1840311 atggtaataattcccttttatgatatgtttaaccagtgccctagaaacaccggttagca 1840253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2581072 - 2581134
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| |||||||||||| | |||| ||| ||||||||||||||    
T  2581072 ttatggtaataattcccttttatggtatgcttaaccaataccccgggagcaccggttagcagg 2581134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3515886 - 3515948
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||||  ||||||||||||||    
T  3515886 ttatggtaataattcccttttatggtatgtttaacctgtgccccaggggcaccggttagcagg 3515948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11115163 - 11115106
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttag 59  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  11115163 ttatggtaataattcccttttatgatatgtttaaccagtgccccggga-caccggttag 11115106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29978352 - 29978413
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||||    
T  29978352 ttatggtaataattcccttttatgatatgcttaaccagcg-ccctggaacaccggttagcagg 29978413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32985259 - 32985198
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcag 62  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||  |||||||||||||    
T  32985259 ttatgataataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcag 32985198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2350772 - 2350832
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |   ||||||||||||    
T  2350772 ttatggtaataattcccttttatgatatgcttaaccagtaccccggagacaccggttagca 2350832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4215815 - 4215877
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| ||  || |||||||||||    
T  4215815 ttatggtaataatttccttttatggtatgcttaaccagtgccccgggggcatcggttagcagg 4215877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35044009 - 35044052
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  35044009 ttatggtaataattctcttttatggtatgcttaaccagtgcccc 35044052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13417025 - 13416983
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccc 43  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  13417025 ttatggtaataattctcttttataatatgcttaaccagtgccc 13416983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 23402258 - 23402320
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |   ||||||||||||||    
T  23402258 ttatggtaataattaccttttatggtatgcttaacccgtgccccggaggcaccggttagcagg 23402320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25165479 - 25165417
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| ||||||||| |||||| |||||||||||||| |||||  ||| ||||||||||||||    
T  25165479 ttatgataataattctcttttacgatatgcttaaccaatgccctgggagcaccggttagcagg 25165417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7851225 - 7851165
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||| ||||||||||  |||||| ||   ||||||||||||    
T  7851225 ttatggtaataattcccttttatggtatgcttaactcgtgccctagagacaccggttagca 7851165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26467190 - 26467130
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||| ||||  ||||||||||||| |   ||||||||||||    
T  26467190 ttatggtaataattcccttttatggtatgtctaaccagtgccccggaggcaccggttagca 26467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27433612 - 27433672
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||| |||| |||||| || |||| ||  ||||||||||||    
T  27433612 ttatggtaataattcccttttatggtatgtttaacccgttccccgggggcaccggttagca 27433672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18276681 - 18276616
Alignment:
Q  1 ttatggtaataattcccttttatgatat---gcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| |||   |||||||||||||||| ||  ||||||||||||||    
T  18276681 ttatggtaataatttccttttatggtattatgcttaaccagtgcccctggggcaccggttagcagg 18276616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29451181 - 29451138
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||    
T  29451181 ttatgataataattcccttttatggtatgcttaacccgtgcccc 29451138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5323520 - 5323562
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccc 43  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  5323520 ttatggtaataattcccttttatggtatgcgtaaccggtgccc 5323562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 21878394 - 21878357
Alignment:
Q  26 tatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  21878394 tatgtttaaccagtgccccaggaacaccggttagcagg 21878357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34706841 - 34706901
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    ||||||||| |||| |||||| |  ||||||||||||||||||| ||  ||||||||||||    
T  34706841 ttatggtaagaatttccttttttcgtatgcttaaccagtgccccgggggcaccggttagca 34706901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11958033 - 11957971
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||    
T  11958033 ttatggtaataattcccttttatggcatgcttaaccagtgccccaggggcaccggttagcagg 11957971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34650899 - 34650837
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  34650899 ttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagg 34650837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35132641 - 35132703
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||||||||||| |||||| ||  ||||||||||||||    
T  35132641 ttatggtaataattctcttttatggtatgcttaaccaatgccccgggggcaccggttagcagg 35132703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6283682 - 6283742
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||  ||||||| |||||||||||||||||| |||  ||||||||||||    
T  6283682 ttatggtaataattcatttttatggtatgcttaaccagtgccctaggggcaccggttagca 6283742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10956071 - 10956114
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    |||||||||||||| |||||||||||||||||||||||| ||||    
T  10956071 ttatggtaataatttccttttatgatatgcttaaccagtacccc 10956114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8787459 - 8787521
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| |||||||||| ||||||| ||||||||||| ||||||| ||  ||||||||||||||    
T  8787459 ttatgataataattccattttatggtatgcttaacctgtgccccgggggcaccggttagcagg 8787521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13661928 - 13661990
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||| |   ||||||||||||||    
T  13661928 ttatggtaataattctcttttatggtatgcttaacccgtgccccggaggcaccggttagcagg 13661990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40564470 - 40564408
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||||||||||| | ||||| |  ||||||||||||||    
T  40564470 ttatggtaataattctcttttatggtatgcttaaccaataccccaagggcaccggttagcagg 40564408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12506416 - 12506464
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggat 49  Q
    |||| |||||||||| ||||||||  |||||||||||||||||||||||    
T  12506416 ttatagtaataattctcttttatggaatgcttaaccagtgccccaggat 12506464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31467840 - 31467900
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    ||||||||| |||| |||||| |  ||||||||||||||||||||||  ||||||||||||    
T  31467840 ttatggtaagaatttcctttttttgtatgcttaaccagtgccccagggacaccggttagca 31467900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 10956009 - 10955974
Alignment:
Q  9 ataattcccttttatgatatgcttaaccagtgcccc 44  Q
    |||||||||||||||| |||||||||||||||||||    
T  10956009 ataattcccttttatggtatgcttaaccagtgcccc 10955974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11846192 - 11846235
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    |||||||||||| ||||||||||  |||||||||||||||||||    
T  11846192 ttatggtaataaatcccttttatagtatgcttaaccagtgcccc 11846235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 2619630 - 2619596
Alignment:
Q  5 ggtaataattcccttttatgatatgcttaaccagt 39  Q
    |||||||||||||||||||||||||||||| ||||    
T  2619630 ggtaataattcccttttatgatatgcttaatcagt 2619596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10054419 - 10054357
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||| ||||||| |||| |||||| ||||||| ||   |||||||||||||    
T  10054419 ttatggtaataattcctttttatggtatgtttaacccgtgccccgggggtaccggttagcagg 10054357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 10070086 - 10070131
Alignment:
Q  18 ttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||| |||||||||||| || ||||||| ||||||||||||||    
T  10070086 ttttatggtatgcttaaccaatgtcccaggagcaccggttagcagg 10070131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20175347 - 20175387
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgc 41  Q
    ||||| ||||||||||||||||| ||||||||||| |||||    
T  20175347 ttatgataataattcccttttataatatgcttaactagtgc 20175387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20553051 - 20553113
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  20553051 ttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagg 20553113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30486330 - 30486392
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  30486330 ttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagg 30486392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1859282 - 1859342
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    ||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||    
T  1859282 ttatggtaataattctcttttatggtatgcttaaccagtgccctaggaacaccggttagca 1859342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4381915 - 4381977
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| ||| ||| ||||||||||    
T  4381915 ttatggtaataattccattttatggtatgcttaaccagtgccccgggagcactggttagcagg 4381977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22068386 - 22068324
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  ||||| ||||||||    
T  22068386 ttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccgattagcagg 22068324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31438766 - 31438828
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  31438766 ttatgataataattcccttttatggtatgcttaaccagtgccccggggacaccggttagcagg 31438828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32360935 - 32360873
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| |||||||||||| |||||| ||  ||||||||||||||    
T  32360935 ttatggtaataattcccttttatggtatgcttaaccaatgccccgggggcaccggttagcagg 32360873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6580309 - 6580352
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  6580309 ttatggtaataattcccttttatggtatgcttaaccagtgcccc 6580352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22567722 - 22567784
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| ||||||||||| |||| |||||  ||||||||||||||    
T  22567722 ttatggtaataattctcttttatggtatgcttaacccgtgctccaggggcaccggttagcagg 22567784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27856462 - 27856400
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| ||  || |||||||||||    
T  27856462 ttatggtaataatttccttttatggtatgcttaaccagtgccccgggggcatcggttagcagg 27856400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28601086 - 28601148
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||| |||||||| |||||||||||||||| |  ||| ||||||||||||||    
T  28601086 ttatggtaataattctcttttatggtatgcttaaccagtgcactgggagcaccggttagcagg 28601148  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34442598 - 34442556
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccc 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  34442598 ttatggtaataattcccttttatggtatgcttaaccagtgccc 34442556  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44588022 - 44588084
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| |||||||||| |||||||| ||   |||||||||||||    
T  44588022 ttatggtaataattcccttttatggtatgcttaacaagtgccccgggggtaccggttagcagg 44588084  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26387130 - 26387089
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcc 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  26387130 ttatggtaataattcccttttatggtatgcttaaccagtgcc 26387089  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4022545 - 4022483
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||| |||||||| |||||||||||||| |||||||||| ||| ||  ||||||||||||||    
T  4022545 ttatgataataatttccttttatgatatgtttaaccagtgtcccgggggcaccggttagcagg 4022483  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13574095 - 13574034
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||| ||||||||| ||||||||||| |||||| | || ||||||||||||||    
T  13574095 ttatggtaataatttccttttatggtatgcttaacccgtgccctaaga-caccggttagcagg 13574034  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31390132 - 31390194
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    |||||||||||||||||||||||| ||||||||||| |||| || ||  ||||| ||||||||    
T  31390132 ttatggtaataattcccttttatggtatgcttaacccgtgctccgggggcaccgattagcagg 31390194  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8969473 - 8969412
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcag 62  Q
    |||||||||||||| ||||||||  |||||||||| |||||||| ||  |||||||||||||    
T  8969473 ttatggtaataatttccttttatagtatgcttaactagtgcccctggggcaccggttagcag 8969412  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22887870 - 22887910
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgc 41  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  22887870 ttatggtaataattctcttttatggtatgcttaaccagtgc 22887910  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38590940 - 38590904
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaacca 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  38590940 ttatggtaataattcccttttatggtatgcttaacca 38590904  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25782899 - 25782860
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtg 40  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  25782899 ttatgataataattcccttttatggtatgcttaaccagtg 25782860  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35851817 - 35851776
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcc 42  Q
    ||||||||||||||| |||||||| |||||||||||| ||||    
T  35851817 ttatggtaataattctcttttatggtatgcttaaccaatgcc 35851776  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3668179 - 3668119
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||| ||||||||  |||| ||||||||||||||  |  ||||||||||||    
T  3668179 ttatggtaataatttccttttatagtatgtttaaccagtgccccgagggcaccggttagca 3668119  T

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Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15016 - 15059
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  15016 ttatggtaataattcccttttatggtatgcttaaccagtgcccc 15059  T

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Target: scaffold0425 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10830 - 10892
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||||||| |||||| ||||||||||||||||| | ||  || |||||||||||    
T  10830 ttatggtaataattcccatttatggtatgcttaaccagtgcctcgggggcagcggttagcagg 10892  T

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Target: scaffold0188 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6176 - 6114
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||||||| |||||||||| |||| |||||| ||||||| ||  ||||||||||||||    
T  6176 ttatggtaataatccccttttatggtatgtttaacccgtgccccgggggcaccggttagcagg 6114  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 116324 - 116385
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcag 62  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||||   ||||||||||||    
T  116324 ttatgataataattcccttttatggtatgtttaacccgtgccccagggataccggttagcag 116385  T

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Target: scaffold0264 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23081 - 23141
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    ||||| ||||||||| |||||||| |||| ||||||||||||||| |  ||||||||||||    
T  23081 ttatgttaataattctcttttatggtatgtttaaccagtgccccaaggacaccggttagca 23141  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 53751 - 53691
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagca 61  Q
    |||||||||||||||||||||||| |||| |||||| || |||| ||  ||||||||||||    
T  53751 ttatggtaataattcccttttatggtatgtttaacccgttccccgggggcaccggttagca 53691  T

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Target: scaffold0524 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 945 - 1004
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagc 60  Q
    |||| |||||||||| |||||||| |||||||||||||||||| | |  |||||||||||    
T  945 ttatagtaataattctcttttatggtatgcttaaccagtgccctaaggacaccggttagc 1004  T

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Target: scaffold0113 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41039 - 41078
Alignment:
Q  1 ttatggtaataattcccttttatgatatgcttaaccagtg 40  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  41039 ttatgataataatttccttttatgatatgcttaaccagtg 41078  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 68352 - 68313
Alignment:
Q  5 ggtaataattcccttttatgatatgcttaaccagtgcccc 44  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  68352 ggtaataattcccttttatggtatgcttaaccagtacccc 68313  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 53417 - 53361
Alignment:
Q  7 taataattcccttttatgatatgcttaaccagtgccccaggatcaccggttagcagg 63  Q
    ||||||||| |||||||| |||||||||| |||||||| |   ||||||||||||||    
T  53417 taataattctcttttatggtatgcttaactagtgccccggaggcaccggttagcagg 53361  T

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