View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15840_low_15 (Length: 284)
Name: NF15840_low_15
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_15 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
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|
Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 16867140 - 16867408
Alignment:
| Q |
1 |
ccaaaccaaatcttgtttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagagg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867140 |
ccaaaccaaaccttgtttcatttctgttctcatacctacaaaatggctgaagctttgattggaatcgtgatagaaaaccttggatcttttgttcgagagg |
16867239 |
T |
|
| Q |
101 |
agattgcatcctttttgggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
16867240 |
agattgcatcctttttgggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccgtgatgtactaaaagatgctgaaaagaagcaaat |
16867339 |
T |
|
| Q |
201 |
aacaagcaatgtcgtgaaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||||| | || |||| | |||||||| ||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
16867340 |
aacaaacgatcctgtgaggaactggctgcaaaaactgggtgacgctgcttatgtacttgatgatatatt |
16867408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 41 - 269
Target Start/End: Complemental strand, 17070492 - 17070264
Alignment:
| Q |
41 |
aaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgacccagaa |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17070492 |
aaatggctgaagctttacttggaatcgtgattgaaaacctcggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgacccagaa |
17070393 |
T |
|
| Q |
141 |
actaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtgaaacaatggctgcagaaattgggt |
240 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
17070392 |
gctaaatgaaaacctcaccacaatccgtgctgtactaaaagatgctgaaaagaagcagataacaagcgatgttgtgaaacaatggctgcagaaattgggt |
17070293 |
T |
|
| Q |
241 |
gatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
17070292 |
gatgctgcttatgtacttgatgatatatt |
17070264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 41 - 269
Target Start/End: Complemental strand, 16798155 - 16797927
Alignment:
| Q |
41 |
aaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgacccagaa |
140 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16798155 |
aaatggctgacgctttaattggaatcgtgattgaaaacctcggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgacccagaa |
16798056 |
T |
|
| Q |
141 |
actaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtgaaacaatggctgcagaaattgggt |
240 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||||||||| |
|
|
| T |
16798055 |
gctaaatgaaaacctcaccacaatccgtgctgtactaaaagatgctgaaaagaagcagataacaagcgatgttgtgcaaaaatggctgcagaaattgggt |
16797956 |
T |
|
| Q |
241 |
gatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
16797955 |
gatgctgcttatgtacttgatgatatatt |
16797927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 41 - 269
Target Start/End: Complemental strand, 16988434 - 16988206
Alignment:
| Q |
41 |
aaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgacccagaa |
140 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16988434 |
aaatggctgacgctttacttggaatcgtgattgaaaacctcggatattttgttcgagaggagcttgcatcctttttgggtgttgaaaaattgacccagaa |
16988335 |
T |
|
| Q |
141 |
actaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtgaaacaatggctgcagaaattgggt |
240 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || | |
|
|
| T |
16988334 |
actaaatgaaaacctcaccacaatccgtgctgtactaaaagatgctcaaaagaagcaaataacaagcaatgttgtgaaacaatggctgcagaaactgtct |
16988235 |
T |
|
| Q |
241 |
gatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
16988234 |
gatgctgcttatgtacttgatgatatatt |
16988206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 16659035 - 16658767
Alignment:
| Q |
1 |
ccaaaccaaatcttgtttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagagg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16659035 |
ccaaaccaaaccttgtttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaacctcggatcttttgttcgagagg |
16658936 |
T |
|
| Q |
101 |
agattgcatcctttttgggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||| || ||| ||||| |||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
16658935 |
agattgcatcctttttgggtgttggagaattgacccaaaggctatctggaaatctcactgcaattcgtgctgtactaaaagatgctgaaaagaagcaaat |
16658836 |
T |
|
| Q |
201 |
aacaagcaatgtcgtgaaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||||| | || | |||| | |||||||| ||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
16658835 |
aacaaacgatcttgtgaggaactggctgcaaaaactgggtgacgctgcttatgtacttgatgatatatt |
16658767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 16839468 - 16839332
Alignment:
| Q |
41 |
aaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgacccagaa |
140 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16839468 |
aaatggctgacgctttaattggaatcgtgattgaaaacctcggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgacccataa |
16839369 |
T |
|
| Q |
141 |
actaaatgaaaacctcaccacaatccatgctgtacta |
177 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
16839368 |
gcaaaatgaaaacctcaccacaatccgtgctgtacta |
16839332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 18872335 - 18872587
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| | ||||||||||| ||||| ||||||| ||||||||||||||||||||| || | ||||||| |
|
|
| T |
18872335 |
ttcatttctgttctcgtacctgcaaaatggctgatgttttacttggaactgtgattcaaaacctcggatcttttgttcgagaggagctttcgaccttttt |
18872434 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
|||||||| ||||||||| || || ||| || ||| |||||| |||| | |||||| || ||||||||||| |||||||| |||||||| ||| ||| |
|
|
| T |
18872435 |
gggtgttgaagaattgacacaaaagctatgtggaaatctcaccgcaattcgtgctgtcctccaagatgctgaagagaagcaactaacaagccgtgttgtg |
18872534 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||||||||||| || ||||||||| ||||| |||||||||||||| |
|
|
| T |
18872535 |
aaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatatt |
18872587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 16782111 - 16781860
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
|||||||||||||||| | || ||||||||||| ||||||||||| |||||||| ||||||| ||||||||||| | ||||||| |||| ||| ||| |
|
|
| T |
16782111 |
ttcatttctgttctcacatctg-aaaatggctgatgctttacttggtatcgtgattcaaaacctcggatcttttgtacaagaggagcttgctacctattt |
16782013 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
||||||||||||||||||||| | |||| | ||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
16782012 |
gggtgttggagaattgacccaaagactatctagaaagctcactttaatccgtgctgtcctaaaagatgctgaaaagaagcaaataacaaatgatgctgtg |
16781913 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||| | ||| || || |||||| ||||||||| |||||||||||||| |
|
|
| T |
16781912 |
aaagagtggttacagcaactgcgtgatgctgcttatgtgcttgatgatatatt |
16781860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 18586853 - 18587105
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
||||||||||||| | ||||| ||||||| |||| | ||||||||||| ||||| ||| ||| ||||||||||||||||||||| || | ||||||| |
|
|
| T |
18586853 |
ttcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcgaccttttt |
18586952 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
|||||||||||||||||| || || || || ||| |||||| |||| | |||||| || ||||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
18586953 |
gggtgttggagaattgacacaaaagttatgtggaaatctcaccgcaattcgtgctgtcctccaagatgctgaagagaagcaaataacaagccgtgttgtg |
18587052 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||||||||||| || ||||||||||||||| ||||| |||||||| |
|
|
| T |
18587053 |
aaagattggctgcagaagctgactgatgttgcttatgttcttgacgatatatt |
18587105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 16838535 - 16838439
Alignment:
| Q |
173 |
tactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtgaaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16838535 |
tactaaaagatgccgaaaagaagcagataacaagcaatgttgtgaaacaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatatt |
16838439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 18793772 - 18794024
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
||||||||||||| | ||||| ||||||| |||| | ||||||||||| ||||| ||| ||| ||||||||||||||||||||| || | ||||||| |
|
|
| T |
18793772 |
ttcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcgaccttttt |
18793871 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
|||||||||||||||||| || || || || ||| |||||| |||| | |||||| || ||||||| ||| ||||||||||||||||| ||| ||| |
|
|
| T |
18793872 |
gggtgttggagaattgacacaaaagttatgtggaaatctcaccgcaattcgtgctgtccttcaagatgccgaagagaagcaaataacaagccgtgttgtg |
18793971 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||||||||||| | ||||||||| ||||| |||||||||||||| |
|
|
| T |
18793972 |
aaagattggctgcagaagctaactgatgttgcctatgttcttgatgatatatt |
18794024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 18869858 - 18870110
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
||||||| ||||||| || || ||||||||||| | ||||||||||| ||||| ||||||| || || ||||||||||||||| || | ||||||| |
|
|
| T |
18869858 |
ttcatttatgttctcttatctggaaaatggctgatgttttacttggaactgtgattcaaaacctcgggtcgtttgttcgagaggagctttcgaccttttt |
18869957 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
|||||||| ||||||||| || || ||| || ||| |||||| |||| || ||||| || ||||||||||| ||||||||||||| ||| ||| ||| |
|
|
| T |
18869958 |
gggtgttgaagaattgacacaaaagctatgtggaaatctcaccgcaattcaggctgtcctccaagatgctgaagagaagcaaataacgagccgtgttgtg |
18870057 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||||||||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
18870058 |
aaagattggctgcagaagctgactgatgttgcttatgttcttgatgatatatt |
18870110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 16790357 - 16790261
Alignment:
| Q |
41 |
aaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgaccca |
137 |
Q |
| |
|
|||||||||| | ||||||| ||| ||| || ||||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
16790357 |
aaatggctgatgttttacttagaaccgtaattcaaaacctcggatcttttgttcaagaggagcttgcatcctttttgggtgttggggaattgaccca |
16790261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 38938492 - 38938759
Alignment:
| Q |
1 |
ccaaaccaaatcttgtttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagagg |
100 |
Q |
| |
|
|||| ||||| |||| |||||| |||||||||||||| |||||||||||| |||||||||| |||| |||| |||| ||| ||| | |||||| |||||| |
|
|
| T |
38938492 |
ccaatccaaaccttgattcatt-ctgttctcatacctgcaaaatggctgacgctttacttgaaatcctgattgaaaccctcggaacatttgttggagagg |
38938590 |
T |
|
| Q |
101 |
agattgcatcctttttgggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaat |
200 |
Q |
| |
|
|| ||||| ||| ||||||||||||||| ||||||||||| ||| || ||| ||||| |||| | |||||| || |||||||||||| |||||||||| |
|
|
| T |
38938591 |
agcttgcaacctatttgggtgttggagagttgacccagaagctacgtggaaatctcactgcaattcgtgctgtcctcaaagatgctgaagagaagcaaat |
38938690 |
T |
|
| Q |
201 |
aacaagcaatgtcgtgaaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
|||||| |||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38938691 |
tacaagccatgttgtgaaagactggctgcagaaattgcgtgatgttgcttatgtacttgatgatatatt |
38938759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 7052435 - 7052663
Alignment:
| Q |
41 |
aaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgacccagaa |
140 |
Q |
| |
|
|||||||||| | ||||||||||| |||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7052435 |
aaatggctgatgttttacttggaaccgtgattgaaaacctcggatctttttttcgagaggagcttgcatcctttttgggtgtaggagaattgacccagaa |
7052534 |
T |
|
| Q |
141 |
actaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtgaaacaatggctgcagaaattgggt |
240 |
Q |
| |
|
||| || ||| ||||| |||| | |||| |||| ||||| |||||| ||||||||| |||||| ||| || ||| | ||||||||||| ||| | |
|
|
| T |
7052535 |
gctatgtggaaatctcactgcaattcgtgctatactcaaagacgctgaagtgaagcaaattacaagccatgctgtaaaagattggctgcagaagctggct |
7052634 |
T |
|
| Q |
241 |
gatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
|||| |||| |||| |||||||||||||| |
|
|
| T |
7052635 |
gatgctgctcatgttcttgatgatatatt |
7052663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 269
Target Start/End: Complemental strand, 38474 - 38245
Alignment:
| Q |
40 |
aaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatcctttttgggtgttggagaattgacccaga |
139 |
Q |
| |
|
|||||||| || |||||||||| ||||||||| ||||| || ||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38474 |
aaaatggccgacgctttacttgcaatcgtgattgaaaatctcggacattttgttcgagatgagcttgcatcctttttgggtgttggagaattgaccgaga |
38375 |
T |
|
| Q |
140 |
aactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtgaaacaatggctgcagaaattggg |
239 |
Q |
| |
|
| || || ||| |||| ||||| |||||| ||||||||||||||||| ||||||||||||| | ||| ||||||| | ||||| ||| || | || |
|
|
| T |
38374 |
agctgcgtggaaaactcagattaatccgtgctgtcctaaaagatgctgaaaaaaagcaaataacaaacgatgccgtgaaagagtggctacagcaactcgg |
38275 |
T |
|
| Q |
240 |
tgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
38274 |
tgattctgcttatgtacttgatgatatatt |
38245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 10156 - 9905
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||||||||| |||| ||||||| ||||| ||||| | ||||||| |||| ||| ||| |
|
|
| T |
10156 |
ttcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgctacctattt |
10058 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
||||||||||||||||||||| | ||| | ||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
10057 |
gggtgttggagaattgacccaaagcctatctagaaagctcactttaatccgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacgatgctgtc |
9958 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||||| ||| || || |||||| ||||||||| |||||||||||||| |
|
|
| T |
9957 |
aaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatatt |
9905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 5689 - 5437
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
||||||||||||| | ||||| ||||||| |||| | ||||||||||| ||||| ||| ||| ||||||||||||||||||||| || | ||||||| |
|
|
| T |
5689 |
ttcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcgaccttttt |
5590 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
|||||||||||||||||| || || || || ||| |||||| |||| | |||||| || ||||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
5589 |
gggtgttggagaattgacacaaaagttatgtggaaatctcaccgcaattcgtgctgtcctccaagatgctgaagagaagcaaataacaagccgtgttgtg |
5490 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||||||||||| || ||||||||||||||| ||||| |||||||| |
|
|
| T |
5489 |
aaagattggctgcagaagctgactgatgttgcttatgttcttgacgatatatt |
5437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 13379107 - 13378918
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| | ||||||||||| ||||| ||||||||||||||||||||| | | ||| || || ||||||| |
|
|
| T |
13379107 |
ttcatttctgttatcatacctgcaaaatggctgatgttttacttggaactgtgattcaaaaccttggatcttttgttcaacaagagctttcaaccttttt |
13379008 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaag |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||| ||||| |||| | ||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
13379007 |
gggtgttggagaattgacccagaagctatgtggaaatctcactgcaattcgggctgtcctcaaagatgctgaagagaagcaaataacaag |
13378918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 9513 - 9262
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
|||||||||||||||| | || ||||||||||| ||||||||||||||| |||| ||||||| ||||| ||||| | ||||||| |||| ||| ||| |
|
|
| T |
9513 |
ttcatttctgttctcacatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagcttgctacctattt |
9415 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
||||||||||||||||||||| | ||| | ||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
9414 |
gggtgttggagaattgacccaaagcctatctagaaagctcactttaatccgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacgatgctgtc |
9315 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||||| ||| || || |||||| ||||||||| |||||||||||||| |
|
|
| T |
9314 |
aaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatatt |
9262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 13861 - 13610
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
|||||||||||||||| | || ||||||||||| ||||||||||||||| |||| ||||||| ||||| ||||| | ||||||| |||| ||| ||| |
|
|
| T |
13861 |
ttcatttctgttctcacatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgctacctattt |
13763 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
||||||||||||||||||||| | ||| | ||| ||||| ||||| |||||| ||||||||||| ||||||||||||||||||| | ||| || |
|
|
| T |
13762 |
gggtgttggagaattgacccaaagcctatctagaaagctcactttaatccgtgctgtcctaaaagatgcagaaaagaagcaaataacaaacgatgctgtc |
13663 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||||| ||| || || ||||| ||||||||| ||||||||||||| |
|
|
| T |
13662 |
aaagagtggctacagcaactgattgatgctgcttatgtgattgatgatatatt |
13610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 10369 - 10117
Alignment:
| Q |
17 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
116 |
Q |
| |
|
||||||||||||| | ||||| ||||||| |||| | ||||||||||| ||||| ||| ||| ||||||||||||||||||||| || | ||||||| |
|
|
| T |
10369 |
ttcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcgaccttttt |
10270 |
T |
|
| Q |
117 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccatgctgtactaaaagatgctgaaaagaagcaaataacaagcaatgtcgtg |
216 |
Q |
| |
|
|||||||||||||||||| || || || || ||| |||||| |||| | |||||| || ||||||| ||| ||||||||||||||||| ||| ||| |
|
|
| T |
10269 |
gggtgttggagaattgacacaaaagttatgtggaaatctcaccgcaattcgtgctgtccttcaagatgccgaagagaagcaaataacaagccgtgttgtg |
10170 |
T |
|
| Q |
217 |
aaacaatggctgcagaaattgggtgatgttgcttatgtacttgatgatatatt |
269 |
Q |
| |
|
||| | ||||||||||| | ||||||||| ||||| |||||||||||||| |
|
|
| T |
10169 |
aaagattggctgcagaagctaactgatgttgcctatgttcttgatgatatatt |
10117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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