View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_18 (Length: 269)
Name: NF15840_low_18
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 48092438 - 48092352
Alignment:
| Q |
41 |
cacactccacattacatcatgtcactttttatccaatcttatgtttgatacaaaatttatctgacttctacgccatatatccatgat |
127 |
Q |
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| T |
48092438 |
cacactccacattacatcatgtcactttttatccaatcttatgtttgatacaaaatttatctgacttctacgccatatatccatgat |
48092352 |
T |
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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 48092358 - 48092248
Alignment:
| Q |
162 |
ccatgattgatactactaaccaattatttatataatttgaccgtgaaataaatcaaatc----------aaataatggatcacatgcaatgaaaaagaga |
251 |
Q |
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| T |
48092358 |
ccatgattgatactactaaccaattatttatataatttgaccgtgaaataaatcaaatcaaatcaaatcaaataatggatcacatgctatgaaaaagaga |
48092259 |
T |
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| Q |
252 |
ataatctaccc |
262 |
Q |
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|||| ||||| |
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| T |
48092258 |
gtaatttaccc |
48092248 |
T |
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