View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_2 (Length: 589)
Name: NF15840_low_2
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 48080580 - 48080188
Alignment:
| Q |
19 |
tcatgaaatgtatttttaaagacaaatatcatgatgtcaatgaatcaaagcaatgcttataaaacaatttgctaaaccaaagtgtgatgtcaaacattcc |
118 |
Q |
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| T |
48080580 |
tcatgaaatgtatttttaaagacaaatatcatgatgtcaatgaatcaaagcaatgcttataaaacaatttgctaaaccaaagtgtgatgtcaaacattcc |
48080481 |
T |
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| Q |
119 |
aatcaatagttgattattcacaatcacaatcctcacaaatgttgcacccaacgtgtaccttgtattcacaacaaatcaattttaaaaataaactaagcaa |
218 |
Q |
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| T |
48080480 |
aaccaatagttgattattcacaatcacaatcctcacaaatgttgcactcaacgtgtaccttgtattcacaacaaatcaattttaaaaataaactaagcaa |
48080381 |
T |
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| Q |
219 |
ttatcacaaaacatgcaatcaatcatggatcactaatatatttccttgggttgtaatatgttagtcttcacaaaatcctttgtttttctaagaacgcaaa |
318 |
Q |
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| T |
48080380 |
ttatcacaaaacatgcaatcaatcatggatcactaatatatttccttgggttgtaatatgttagtcttcacaaaatcctttgtttttctaagaacgcaaa |
48080281 |
T |
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| Q |
319 |
aagcctgaaaggttaaaagaacattttttcaatatacactacatatcctgaccacactttctttccttttccacactcaacaccatttggtaa |
411 |
Q |
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| T |
48080280 |
aagcctaaaaggttaaaagaacattttttcaatatacactacatatcctgaccacactttctttccttttccactctcaacaccatttggtaa |
48080188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 27906435 - 27906365
Alignment:
| Q |
87 |
ttgctaaaccaaagtgtgatgtcaaacattccaatcaatagttgattattcacaatcacaatcctcacaaa |
157 |
Q |
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| T |
27906435 |
ttgctaaatcaaagtgtgatgtcaaacatttcaatcaaaagtcaattattcataatcacaatgctcacaaa |
27906365 |
T |
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