View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_20 (Length: 254)
Name: NF15840_low_20
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 41036792 - 41036552
Alignment:
| Q |
13 |
catcatcatcagtaccaaagtattagnnnnnnnnntattaaaattgacgagtgttggctctaatttcttgactgttttgctgcttagtgctctatatcta |
112 |
Q |
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| T |
41036792 |
catcatcatcagtaccaaagtattagaaaaaaaa-tattaaaattgacgagtgttggctctaatttcttgactgttttgctgcttagtgctctatatcta |
41036694 |
T |
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| Q |
113 |
gtactcatccctatcatggaaagtactaataatcttttctttttccggagtcagttgtggtaattagaaagtccatgactagattgaagtgaggaaaatg |
212 |
Q |
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| T |
41036693 |
gtactcatccctatcatggaaagtactaataatcttttctttttccggagtcagttgtggtaattagaaattccatgactagattgaagtgaggaaaatg |
41036594 |
T |
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| Q |
213 |
tttaatcccaatttacacacatcatcaccacttccactattt |
254 |
Q |
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| T |
41036593 |
gttaatcccaatttacacacatcatcaccacttccactattt |
41036552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 41046575 - 41046460
Alignment:
| Q |
97 |
tagtgctctatatctagtactcatccctatcatggaaagtactaataatcttttctttttccggagtcagttgtggtaattagaaagtccatgactagat |
196 |
Q |
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||||||||||||| | |||| |||||||||||||||||| | || | |||||||| ||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
41046575 |
tagtgctctatatttggtacccatccctatcatggaaagaagtaccagtcttttctatttttggagtcagttgtggtaataagaaagtccatgactagat |
41046476 |
T |
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| Q |
197 |
tgaagtgaggaaaatg |
212 |
Q |
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| T |
41046475 |
tgaattgaagaaaatg |
41046460 |
T |
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