View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_25 (Length: 220)
Name: NF15840_low_25
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 4734281 - 4734471
Alignment:
| Q |
13 |
tatatgtcttcttaggaagttcaaaggacaacattatttaaattaaagtgagacaagtcataaacgtaacaacgttataaaataaactgatatgtcgtgc |
112 |
Q |
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| T |
4734281 |
tatatgtcttgttaggaagttcaaaggacaacattatttaaattaaagtgagacaaatcataaacgtaacaacattataaaataaactgatatgtcgtgc |
4734380 |
T |
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| Q |
113 |
acataaaactttatgtttaaaaggaaataaaattaactagtataattactatcatcgacatttacatttcaaacaaaaaattagggaagaa |
203 |
Q |
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| T |
4734381 |
acataaaattttatgtttaaaaggaaataaaattaactagtataattactatcatcgacatttacatttcaaagaaaaaattagggaagaa |
4734471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 4730520 - 4730595
Alignment:
| Q |
25 |
taggaagttcaaaggacaacattatttaaattaaa--gtgagacaagtcataaacgtaacaacgttataaaataaa |
98 |
Q |
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| T |
4730520 |
taggaagttcaaaggacaacattatttaaattaaagtgtgagacaagtcataaacgtaacaacattataaaataaa |
4730595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 4731445 - 4731556
Alignment:
| Q |
90 |
taaaataaac--tgatatgtcgtgcacataaaactttatgtttaaaaggaaataaaattaactagtataattactatcatcgacatttacatttcaaaca |
187 |
Q |
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| T |
4731445 |
taaaataaacattgatatgccatgcaaataaagttttatgtttaaaaagaaataaaattaacaattacaattactatcatcgacatttacatttcaaaca |
4731544 |
T |
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| Q |
188 |
aaaaattaggga |
199 |
Q |
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| T |
4731545 |
aaatattgggga |
4731556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 4744337 - 4744373
Alignment:
| Q |
26 |
aggaagttcaaaggacaacattatttaaattaaagtg |
62 |
Q |
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| T |
4744337 |
aggaagttcaaaggacaacattatttaaactaaagtg |
4744373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 4739852 - 4739909
Alignment:
| Q |
146 |
taactagtataattactatcatcgacatttacatttcaaacaaaaaattagggaagaa |
203 |
Q |
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| T |
4739852 |
taactattataattactatcatccacaattacatttcagacaaaatattgggaaagaa |
4739909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 4751112 - 4751182
Alignment:
| Q |
29 |
aagttcaaaggacaacattatttaaattaaagtgagacaa--gtcataaacgtaacaacgttataaaataaa |
98 |
Q |
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| T |
4751112 |
aagtttaaaggacaa-attatttaaattaaagtgtgcgaatggtcataaacgtaataacattataaaataaa |
4751182 |
T |
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