View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_27 (Length: 218)
Name: NF15840_low_27
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 32733645 - 32733827
Alignment:
| Q |
20 |
actctatcattcaatttgatttcaaaaaggcacggcaagtcggcaacaagagcaatttaaagcagaatgttcataaatcaacctcaatatatatgacacg |
119 |
Q |
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| T |
32733645 |
actctatcattcaatttggtttcaaaaaggcacggcaagtcggcaacaag--caatttaaagcagaatgttcataaatcaacctcaatatatatgacacg |
32733742 |
T |
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| Q |
120 |
atatttcaaatcaatgcatatttgtaattggc--tatctaaaattcaaggtctcactatttagaatttcattttgcatcattcat |
202 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32733743 |
atatttcaaatcaatgcatatttgtaattggctatatctaaaattcaaggtctcactatttagaatttcattttgcgtcattcat |
32733827 |
T |
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