View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_3 (Length: 542)
Name: NF15840_low_3
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 46738891 - 46738376
Alignment:
| Q |
1 |
aagaggaggtatatggatttaccaaaacagacaccatttgcacttaataatcagatacagattaatttttctactaaaactttctttttaagggattttc |
100 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46738891 |
aagatgaggtatatggatttaccaaaacagacatcatttgcacttaataatcagattcagattaatttttctactaaaactttctttttaagggattttc |
46738792 |
T |
|
| Q |
101 |
tgctaaaacttgtttcccaagcatttgtgtaattaattctacgataagtctttaaacaatccaccgaaaaatgaaaccattggcatgctagccagattat |
200 |
Q |
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| T |
46738791 |
tactaaaacttgtttcccaagcatttgtgtaattaattctacgataagtctttaaacaatccaccgaaaaatgaa-----------gctagccagattat |
46738703 |
T |
|
| Q |
201 |
acatacagaccattatcttctcatgtagttgttctttccaaattcaagggttgaattatcaatatacaacatacttcagaagacaatttgctcagttaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46738702 |
acatacagaccattatcttctcatgtagttgttctttccaaattcaagggttgaattatcaatatacaacatacttcagaagacaatttgctcagttaga |
46738603 |
T |
|
| Q |
301 |
cattcacttcacccaaaatctttcaacatttgaactactatcaccagagcaactttgtcatgccgatatccttctctggatggtaaccaacattgtttac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46738602 |
cattcacttcacccaaaatctttcaacatttgaactactatcaccggagcaactttgtcatgccgatatccttctctggatggtaaccaacattgtttac |
46738503 |
T |
|
| Q |
401 |
tcaatcggctgatgtgacgctcacacgggttcatttatcattagttttatgttaattctataaacgattatacactctttaattggttaaaatatacatg |
500 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
46738502 |
tcaatcggctgatgtgacgctcacacgagttcatttatcattagttttatgttaattctataaacgattatacactctttaattggttaaaatctacgtg |
46738403 |
T |
|
| Q |
501 |
aatctctgagaatttatgtgagatctg |
527 |
Q |
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||||||||||||||||||||||||||| |
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| T |
46738402 |
aatctctgagaatttatgtgagatctg |
46738376 |
T |
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