View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_4 (Length: 490)
Name: NF15840_low_4
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 19094922 - 19094470
Alignment:
| Q |
19 |
gagtcagccacaggaagaagcgtgatgcatgctacaagccacatgttgtgcaatcagaaggggattcaagatggacaaccaatacttaaaatgcaaagcg |
118 |
Q |
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| T |
19094922 |
gagtcagccactagaagaagagtgatgcatgctacaagccacatgttgtgcaatcagaaggggattcaagatggacaaccaatacttaaaatgcaaagcg |
19094823 |
T |
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| Q |
119 |
tgttatgagccacgcatcatgccatcatgaagagagatgaagtggttcgctattgccatcatgtcaaggaattcaagcatgatgacagagatgccttctt |
218 |
Q |
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| T |
19094822 |
tgttatgagccacgcatcatgccatcatgaagagagatgaagtggttcgctattgccatcatgtcaaggaattcaagcatgatgacagagatgccttctt |
19094723 |
T |
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| Q |
219 |
caattccattcaatacattatacttatgtaaatttggtaccttttttatccgttaagaacgtcagtagtgaagctaggtcatcaaagagttatacagtag |
318 |
Q |
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| T |
19094722 |
caatttcattcaatacattatacttatgtaaatttggtaccttttttatccgttaagaacgt-agtagtgaagctaggtcatcaaagagttatacagtag |
19094624 |
T |
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| Q |
319 |
tctcattctgggttccaatgttccggtctacgacacaagtctatgtttttcccttgcaaaggggttgcttcctaaggtttttggatgtgcaaagtctaac |
418 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19094623 |
tcccattctgggttccaatgttccggtctacgacacaagtctatgtttttcccttgcaaaggggttgcttcctaaggttttttgatgtgcaaagtctaac |
19094524 |
T |
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| Q |
419 |
gtggtaaatatctcctatattataataaggcgaagaacggataagaactcatca |
472 |
Q |
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| T |
19094523 |
gtggtaaatatctcctatattataataaggcgaagaacggataagaactcatca |
19094470 |
T |
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