View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15840_low_6 (Length: 460)

Name: NF15840_low_6
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15840_low_6
NF15840_low_6
[»] chr1 (5 HSPs)
chr1 (1-441)||(48507447-48507887)
chr1 (224-292)||(14644837-14644905)
chr1 (224-293)||(47978335-47978404)
chr1 (231-293)||(6932092-6932154)
chr1 (224-272)||(22548186-22548234)
[»] chr7 (2 HSPs)
chr7 (226-292)||(45557481-45557547)
chr7 (226-292)||(38123569-38123635)
[»] chr6 (2 HSPs)
chr6 (227-292)||(30927107-30927172)
chr6 (228-292)||(34026390-34026454)
[»] chr3 (2 HSPs)
chr3 (30-94)||(2487213-2487280)
chr3 (228-293)||(51285685-51285750)
[»] chr8 (2 HSPs)
chr8 (224-292)||(43024941-43025010)
chr8 (224-265)||(33733156-33733197)
[»] chr2 (3 HSPs)
chr2 (227-275)||(11650661-11650709)
chr2 (224-292)||(30503323-30503391)
chr2 (224-275)||(37745785-37745836)
[»] chr4 (3 HSPs)
chr4 (363-430)||(18508708-18508775)
chr4 (223-272)||(17897794-17897843)
chr4 (224-271)||(53158946-53158994)
[»] chr5 (2 HSPs)
chr5 (224-277)||(36927588-36927641)
chr5 (224-272)||(9818870-9818918)


Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 48507447 - 48507887
Alignment:
Q  1 agcaagaatttgatgctgggagtgggaactaaacttagaaactatacgccacatttgattatttcaaataagttggtttatcatgggtgtttttgcatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48507447 agcaagaatttgatgctgggagtgggaactaaacttagaaactatacgccacatttgattatttcaaataagttggtttatcatgggtgtttttgcatat 48507546  T
Q  101 tagtttccatatgatttttatgtcattgtgacaaacttcaaagtgagttttaatttgctatgctaatgctattattatgttataacgttgtaagtttatg 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48507547 tagtttccatataatttttatgtcattgtgacaaacttcaaagtgagttttaatttgctatgctaatgctattattatgttataacgttgtaagtttatg 48507646  T
Q  201 tacaagttttattagaacgtatatgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaatattaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  48507647 tacaagttttattagaacgtatatgtatgtttggttttgcaatgataaaaattaattttgagtgatttgattatgatgaaaagtgagttgaattttaaat 48507746  T
Q  301 ttatgtgtaaataaaattaattttgcatctctatgattctagagaccatacaattcatagtctcaaataaaatcaattttaaagacaaaataaattatac 400  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48507747 ttttgtgtaaataaaattaattttgcatctctatgattctagagaccatacaattcatagtctcaaataaaatcaattttaaagacaaaataaattatac 48507846  T
Q  401 tcaaaagcaatcaaatatgtttgaatcaatcctacacatcc 441  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48507847 tcaaaagcaatcaaatatgtttgaatcaatcctacacatcc 48507887  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 14644905 - 14644837
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaa 292  Q
    |||||||||| |||||| ||||||| |||||||||| ||||| ||||||||||| ||||||| ||||||    
T  14644905 tgtatgtttgattttgcggtgacaagaattaattttaagtgaattgattatgactaaaagtgtgttgaa 14644837  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 47978335 - 47978404
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaat 293  Q
    ||||||| ||||||||| ||||||| |||| ||||||||||| |||||| ||   |||||||||||||||    
T  47978335 tgtatgtatggttttgcggtgacaagaattcattttgagtgaattgattttgggtaaaagtgagttgaat 47978404  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 6932092 - 6932154
Alignment:
Q  231 ttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaat 293  Q
    |||||| ||| ||||||||| || ||||||| ||| |||||| |||| |||||||||||||||    
T  6932092 ttggttctgcggtgacaaaatttgattttgaatgaattgattctgactaaaagtgagttgaat 6932154  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 22548186 - 22548234
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgatt 272  Q
    ||||||||||||||||| |||| ||||||| ||||| ||||| ||||||    
T  22548186 tgtatgtttggttttgcggtgataaaaattgattttaagtgaattgatt 22548234  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 45557547 - 45557481
Alignment:
Q  226 tatgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaa 292  Q
    ||||||||||||||||||||||  |||| ||||||| ||| |||||| |||| ||||||||||||||    
T  45557547 tatgtttggttttgcagtgacaggaattgattttgaatgaattgattctgactaaaagtgagttgaa 45557481  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 38123569 - 38123635
Alignment:
Q  226 tatgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaa 292  Q
    ||||||||||| ||| |||| ||| || |||||||||| | ||||||||||| |||| |||||||||    
T  38123569 tatgtttggttctgcggtgagaaatataaattttgagtaaattgattatgactaaaattgagttgaa 38123635  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 30927172 - 30927107
Alignment:
Q  227 atgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaa 292  Q
    |||||||||||||||| || || |||| || |||||||| |||||| |||||||||||||||||||    
T  30927172 atgtttggttttgcagagaaaataattgatcttgagtgagttgattctgacgaaaagtgagttgaa 30927107  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 34026390 - 34026454
Alignment:
Q  228 tgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaa 292  Q
    ||||||||||||| ||||||| |||  ||||||||||| |||||| || | ||||||||||||||    
T  34026390 tgtttggttttgctgtgacaagaatatattttgagtgaattgattctggctaaaagtgagttgaa 34026454  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 2487213 - 2487280
Alignment:
Q  30 taaacttagaaactatac---gccacatttgattatttcaaataagttggtttatcatgggtgttttt 94  Q
    |||||||||||||||||    | |||||||||||||||||||||| || |||||||||||||||||||    
T  2487213 taaacttagaaactataacatgtcacatttgattatttcaaataattttgtttatcatgggtgttttt 2487280  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 51285750 - 51285685
Alignment:
Q  228 tgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaat 293  Q
    ||||||||||||| |||| ||||||| ||||||||||| || |||||| | |||||||||||||||    
T  51285750 tgtttggttttgcggtgagaaaaattgattttgagtgaatttattatggctaaaagtgagttgaat 51285685  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 43025010 - 43024941
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgac-gaaaagtgagttgaa 292  Q
    ||||||||||| ||||| |||||||||||| ||||||| ||| ||||| |||||  ||||||||||||||    
T  43025010 tgtatgtttgggtttgcggtgacaaaaattgattttgattgaattgatcatgactaaaaagtgagttgaa 43024941  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 33733197 - 33733156
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaattaattttgagtga 265  Q
    |||||||||| || ||||||||||| ||||||||||||||||    
T  33733197 tgtatgtttgattatgcagtgacaataattaattttgagtga 33733156  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 11650661 - 11650709
Alignment:
Q  227 atgtttggttttgcagtgacaaaaattaattttgagtgatttgattatg 275  Q
    ||||||||||||||  ||||||||||| ||||||||||| |||||||||    
T  11650661 atgtttggttttgcgttgacaaaaattgattttgagtgaattgattatg 11650709  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 30503391 - 30503323
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgacgaaaagtgagttgaa 292  Q
    ||||||||||||| |||| |||||| |||  ||||||||||| |||||| |||| |||||| |||||||    
T  30503391 tgtatgtttggttatgcaatgacaataatcgattttgagtgaattgattctgactaaaagttagttgaa 30503323  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 37745785 - 37745836
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgattatg 275  Q
    ||||||||||||||||| |||| || |||| ||||||||||| |||||||||    
T  37745785 tgtatgtttggttttgcggtgataataattgattttgagtgaattgattatg 37745836  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 430
Target Start/End: Original strand, 18508708 - 18508775
Alignment:
Q  363 tcaaataaaatcaattttaaagacaaaataaattatactcaaaagcaatcaaatatgtttgaatcaat 430  Q
    |||| ||||||||||| | |||||||||| |||   ||| |||| |||||||||||||||||||||||    
T  18508708 tcaagtaaaatcaattctgaagacaaaatcaatacaacttaaaaacaatcaaatatgtttgaatcaat 18508775  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 17897794 - 17897843
Alignment:
Q  223 atgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgatt 272  Q
    |||| ||||||||| ||| |||||||||||| ||||||||||| ||||||    
T  17897794 atgtttgtttggttctgcggtgacaaaaattgattttgagtgaattgatt 17897843  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 53158946 - 53158994
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaa-ttaattttgagtgatttgat 271  Q
    ||||||||||||||||| |||||||||| || ||||||||||| |||||    
T  53158946 tgtatgtttggttttgcggtgacaaaaagttgattttgagtgaattgat 53158994  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 36927588 - 36927641
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgattatgac 277  Q
    |||||||||||||||||| ||| ||||||| ||||||| ||| |||||| ||||    
T  36927588 tgtatgtttggttttgcattgagaaaaattgattttgactgaattgattctgac 36927641  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 9818918 - 9818870
Alignment:
Q  224 tgtatgtttggttttgcagtgacaaaaattaattttgagtgatttgatt 272  Q
    ||||||||||||| ||| ||||||| |||| ||||||||||| ||||||    
T  9818918 tgtatgtttggttctgcggtgacaagaatttattttgagtgaattgatt 9818870  T

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