View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15840_low_8 (Length: 429)
Name: NF15840_low_8
Description: NF15840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15840_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Original strand, 50749660 - 50750063
Alignment:
| Q |
13 |
aatatcggaaaaagtttgaatcatgttacatatgcagatcccaatcgcagttggggtaactgcgtacgaggcaactgcattgttcacagggagaagagtg |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50749660 |
aatatcagaaaaagtttgaatcatgttacatatgcagatcccaatcgcagttggggtaactgcgtacgaggcaactgcattgttcacagggagaagagtg |
50749759 |
T |
|
| Q |
113 |
atagcttctactggtgatcaagggaaagcatttacagttggccagctagttatctattgtgtctttggtgtgctggccggtatagtcggtggattgctgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50749760 |
atagcttctactggtgatcaagggaaagcatttacagttggccagctagtcatctattgtgtctttggtgtgctggccggtatagtcggtggattgctgg |
50749859 |
T |
|
| Q |
213 |
gactaggaggcggatttgttatgggtccgctttttctagagctaggagtccctcctcaagtgagtttcaaactgcagtatataaatcatgtttctcttat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50749860 |
gactaggaggcggatttgttatgggtccgctttttctagagctaggagtccctcctcaagtgagtttcaaactgcagtatataaatcatgcttctcttat |
50749959 |
T |
|
| Q |
313 |
cctgatcattaagtgattcctgattggatcgggtgtcatctgtgcaggtatcaagcgccacagccacttttgcaatgacattctcctcgtctatgtctgt |
412 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50749960 |
cctgatcattaagtgattcctaattggatcgggtgtcatctgtgcaggtgtcaagcgccacagccacttttgcaatgacattctcctcgtctatgtctgt |
50750059 |
T |
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| Q |
413 |
tgtg |
416 |
Q |
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|||| |
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| T |
50750060 |
tgtg |
50750063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 35 - 415
Target Start/End: Complemental strand, 50813153 - 50812749
Alignment:
| Q |
35 |
atgttacatatgcagatcccaatcgcagttggggtaactgcgtacgaggcaa-----ctgcattgttcacagggagaagagtgatagcttctactggtga |
129 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
50813153 |
atgttacatatgcagatactaatcgcagttggggtaactgcgtacgaggcaaagcaactgcattgttcacacagagaagagtgatagcttctgctggtga |
50813054 |
T |
|
| Q |
130 |
tcaagggaaagcatttacagttggccagctagttatctattgtgtctttggtgtgctggccggtatagtcggtggattgctgggactaggaggcggattt |
229 |
Q |
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|||||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50813053 |
tcaagggaaagcatttacagttggcctgctaatcatctattgtgtctttggtgtactggccggtatagtcggtggattgctgggactaggaggcggattt |
50812954 |
T |
|
| Q |
230 |
gttatgggtccgctttttctagagctaggagtccctcctcaa------gtgagtttcaaactgcagtatataaatcatgtttctcttatcctgatcatta |
323 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||| | |||||||||||||||||| | |
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| T |
50812953 |
gttatgggtccgctttttctagagctaggggtcccttctcaatcaagtgagagtttcaaactgcagtatataaatcgtcattctcttatcctgatcatca |
50812854 |
T |
|
| Q |
324 |
a-------------gtgattcctgattggatcgggtgtcatctgtgcaggtatcaagcgccacagccacttttgcaatgacattctcctcgtctatgtct |
410 |
Q |
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| T |
50812853 |
aacagttggttagtatgattcctaattggatcggatgtcttctttgcaggtgccaagcgccacgaccacttttgcaatgacattctcctcgtctatgtct |
50812754 |
T |
|
| Q |
411 |
gttgt |
415 |
Q |
| |
|
||||| |
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| T |
50812753 |
gttgt |
50812749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 35 - 415
Target Start/End: Original strand, 50862711 - 50863115
Alignment:
| Q |
35 |
atgttacatatgcagatcccaatcgcagttggggtaactgcgtacgaggcaa-----ctgcattgttcacagggagaagagtgatagcttctactggtga |
129 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
50862711 |
atgttacatatgcagatactaatcgcagttggggtaactgcgtacgaggcaaagcaactgcattgttcacacagagaagagtgatagcttctgctggtga |
50862810 |
T |
|
| Q |
130 |
tcaagggaaagcatttacagttggccagctagttatctattgtgtctttggtgtgctggccggtatagtcggtggattgctgggactaggaggcggattt |
229 |
Q |
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|||||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50862811 |
tcaagggaaagcatttacagttggcctgctaatcatctattgtgtctttggtgtactggccggtatagtcggtggattgctgggactaggaggcggattt |
50862910 |
T |
|
| Q |
230 |
gttatgggtccgctttttctagagctaggagtccctcctcaa------gtgagtttcaaactgcagtatataaatcatgtttctcttatcctgatcatta |
323 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||| | |||||||||||||||||| | |
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| T |
50862911 |
gttatgggtccgctttttctagagctaggggtcccttctcaatcaagtgagagtttcaaactgcagtatataaatcgtcattctcttatcctgatcatca |
50863010 |
T |
|
| Q |
324 |
a-------------gtgattcctgattggatcgggtgtcatctgtgcaggtatcaagcgccacagccacttttgcaatgacattctcctcgtctatgtct |
410 |
Q |
| |
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| |||||||| |||||||||| |||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50863011 |
aacagttggttagtatgattcctaattggatcggatgtcttctttgcaggtgccaagcgccacgaccacttttgcaatgacattctcctcgtctatgtct |
50863110 |
T |
|
| Q |
411 |
gttgt |
415 |
Q |
| |
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||||| |
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|
| T |
50863111 |
gttgt |
50863115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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