View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15841_high_3 (Length: 237)
Name: NF15841_high_3
Description: NF15841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15841_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26828945 - 26828709
Alignment:
| Q |
1 |
tttctcggccaaggttgtacagacagcatagaatcctcccggccagctgctttagtatcagcagtgcgcaggccattattagaggcagttgccacactca |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26828945 |
tttctccgccaaggttgtacagacagcatagaatcctcccggccagctgttttagtatcagcagtgcgcaggccattattagaggcagttgccacactca |
26828846 |
T |
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| Q |
101 |
actgtttactgctgtttgcggttttccacccctgcagcaagtgcctcgcgtgctctggaatagtttgacagttttcagttacattttgtattttatttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26828845 |
actgtttactgctgtttgcggttttccacccctgcagcaagtgcctcgcgtgctctggaatagtttgacagttttcagttacattttgtattttctttga |
26828746 |
T |
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| Q |
201 |
ttctttattgttctattggaaaaataagaaacatttc |
237 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
26828745 |
ttctttattggtctattggaaaaataagaaacatttc |
26828709 |
T |
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