View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15841_high_5 (Length: 211)
Name: NF15841_high_5
Description: NF15841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15841_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 7805752 - 7805575
Alignment:
| Q |
19 |
actactgaaggaatggttttgggaatagatgaaattatagaagaattgtcctcctatcctaggatatctcaaggatgtaaatttattttcgtttgaaata |
118 |
Q |
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| T |
7805752 |
actactgaaggaatggttttgggaatagatgaaattatagaagaattttcctcctattctaggataactcaaggatgtaaatttattttcgtttgaaata |
7805653 |
T |
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| Q |
119 |
aagtgcaattactattaaggagagttttctcatatttctgattctgtgtatactaattgattttctcacagttctgtgct |
198 |
Q |
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| T |
7805652 |
aagtgcaat--ctattaaggagagttttctcatatttctgattctgtgtatactaattgattttctcacagttctgtgct |
7805575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 7819952 - 7819874
Alignment:
| Q |
21 |
tactgaaggaatggttttgggaatagatgaaattatagaagaattgtcctcctatcctaggatatctcaaggatgtaaa |
99 |
Q |
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| T |
7819952 |
tactgaaagaatggttttggaaaaaagtgcaattatagaagaattgtcctcctatccaaggatatctcaaggatgtaaa |
7819874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 10416610 - 10416657
Alignment:
| Q |
50 |
aaattatagaagaattgtcctcctatcctaggatatctcaaggatgta |
97 |
Q |
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| T |
10416610 |
aaattatagaacaactgtcctcctatcctaggaaatctccaggatgta |
10416657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 19316542 - 19316493
Alignment:
| Q |
50 |
aaattatagaagaattgtcctcctatcctaggatatctcaaggatgtaaa |
99 |
Q |
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| T |
19316542 |
aaattagagaagaattgtcctcctatccaaggatatctcgaggatgtaaa |
19316493 |
T |
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