View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15842_high_2 (Length: 396)
Name: NF15842_high_2
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 107 - 381
Target Start/End: Original strand, 6629643 - 6629922
Alignment:
| Q |
107 |
taatgttaatgaccaatctactttga-----tggcccattttttcagccaataatgttgagtgcattattgagggattttaatccgcgagtaatgttgtg |
201 |
Q |
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| T |
6629643 |
taatgttaatgaccaatctactttggattagtggcacattttttcagccaataatgttgagtgcattattgagggattttaatccgcgagtaatgttgtg |
6629742 |
T |
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| Q |
202 |
acaaattgaaaaatccgtcggtaccctttatttaacnnnnnnncacataacaccctcactcttctctctcacgctgagatttgtctcttcccttcacctt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6629743 |
acaaattgaaaaatccgtcggtaccctttatttaacaaaaaaacacataacaccctcactcttctctctcacgctgagatttgtctcttcccttcacctt |
6629842 |
T |
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| Q |
302 |
cacaattttctctcgccacccatcaccaccacgatgcaaacatcgctcaacctcaacgcctcctcacctcatctctgtct |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6629843 |
cacaattttctctcgccacccatcaccaccacgatgcaaacatcgctcaacctcaacgcctcctcacctcatctctgtct |
6629922 |
T |
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