View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15842_low_1 (Length: 540)
Name: NF15842_low_1
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 33127258 - 33126724
Alignment:
| Q |
1 |
cctcaaatatattcctagaattaataaccagcattttgaaaaattagagttcgnnnnnnntatacaaaacatatccatactagagtcctaactaaatatt |
100 |
Q |
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| T |
33127258 |
cctcaaatatattcctagaattaataaccagcattttgaaaaatttgagttcgaaaaaaatatacaaaacata------ctagagtcctaactaaatatt |
33127165 |
T |
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| Q |
101 |
-gcttcaaaccgttcatacatggctttagaagttaaaaagatggcaatatcaagagaagtatcaacaattatatggctagtctcgtggagtcttattatg |
199 |
Q |
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| T |
33127164 |
tgcttcaaaccgttcatacatggctttagaagttaaaaagatggcaatatcaagagaattatcaacaattatatggctagtctcgtggagtcttattatg |
33127065 |
T |
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| Q |
200 |
atctatcatgttagtttagccgaaagagttttggaagacgaaaaaccagaaattgttgtcatgnnnnnnngaagtttcttctggtatagtggagagtcgt |
299 |
Q |
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| T |
33127064 |
atctatcacgttagtttagccgaaagagttttggaagacgaaaaaccagaaattgttgtcatgaaaaaaacaagtttcttctggtatagtggagagtcgt |
33126965 |
T |
|
| Q |
300 |
cctatgaacgtgtttggcctgtgagtttatcaaacacttatgttttttgttgtttattacgtcatttataatattgacatgatgttatgaaattggtgat |
399 |
Q |
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| T |
33126964 |
cctatgaacgtgtttggcctgtgagtttatcaaacacttatgttttttgttgtttattacgtcatttataatattgacatgatgttatgaaattggtgat |
33126865 |
T |
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| Q |
400 |
gatgcatggtaatggttttgttgagcaggaaatgaagtttggttggagaattgtcgtagggtctattgtcggattttttggagcagcattggtaagtgta |
499 |
Q |
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| T |
33126864 |
gatgcatggtaatcgttttgttgagcaggaaatgaagtttggttggagaattgtcgtagggtctattgtcggattttttggagcagcattgggaagtgta |
33126765 |
T |
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| Q |
500 |
ggaggggtaggaggtggaggaatttttatccctatgctcac |
540 |
Q |
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| T |
33126764 |
ggaggggtaggaggtggaggaatttttatccctatgctcac |
33126724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 419 - 537
Target Start/End: Original strand, 7568570 - 7568688
Alignment:
| Q |
419 |
gttgagcaggaaatgaagtttggttggagaattgtcgtagggtctattgtcggattttttggagcagcattggtaagtgtaggaggggtaggaggtggag |
518 |
Q |
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| T |
7568570 |
gttgagcaggaaatgaaatttgattggaaaattatagttggatcaattattggatttttgggagcagctttgggaagtgttggaggtgtaggaggtggtg |
7568669 |
T |
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| Q |
519 |
gaatttttatccctatgct |
537 |
Q |
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| T |
7568670 |
gaatttttgtccctatgct |
7568688 |
T |
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