View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15842_low_10 (Length: 334)
Name: NF15842_low_10
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 83 - 318
Target Start/End: Complemental strand, 686396 - 686161
Alignment:
| Q |
83 |
gttctcatgtatctcttgttccaccaggtctaaatgcattttggttacatacgagagtttcatgttttgctattatttgctttatgttttgtcataaaaa |
182 |
Q |
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| T |
686396 |
gttctcatgtatctcttgttccaccaggtctaaatgcattttggttacatacgagagtttcatgttttgctattatttgctttatgttttgtcataaaaa |
686297 |
T |
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| Q |
183 |
taaatgctctttccatggatttattttgaagttaaaacttccatattgctttaattggctttgtgcatttaatgtacttcaaacttagtttaatgacacg |
282 |
Q |
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| T |
686296 |
taaatgttctttccatggatttattttgaagttaaaacttccatattgctttaattggctttgtgcatttaatgtacttcaaacttaatttaatgacacg |
686197 |
T |
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| Q |
283 |
agcttatgaatttagaaattatttgtcgccaaacat |
318 |
Q |
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| T |
686196 |
agcttatgaatttagaaattatttgtcgccaaacat |
686161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 83 - 318
Target Start/End: Complemental strand, 703860 - 703625
Alignment:
| Q |
83 |
gttctcatgtatctcttgttccaccaggtctaaatgcattttggttacatacgagagtttcatgttttgctattatttgctttatgttttgtcataaaaa |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
703860 |
gttctcatgtatctcttgttccaccaggtctaaatgcattttggttacatacgagagtttcatgttttgctattatttgctttatgttttgtcataaaaa |
703761 |
T |
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| Q |
183 |
taaatgctctttccatggatttattttgaagttaaaacttccatattgctttaattggctttgtgcatttaatgtacttcaaacttagtttaatgacacg |
282 |
Q |
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| T |
703760 |
taaatgttctttccatggatttattttgaagttaaaacttccatattgctttaattggctttgtgcatttaatgtacttcaaacttaatttaatgacacg |
703661 |
T |
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| Q |
283 |
agcttatgaatttagaaattatttgtcgccaaacat |
318 |
Q |
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| T |
703660 |
agcttatgaatttagaaattatttgtcgccaaacat |
703625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 83 - 318
Target Start/End: Original strand, 731777 - 732012
Alignment:
| Q |
83 |
gttctcatgtatctcttgttccaccaggtctaaatgcattttggttacatacgagagtttcatgttttgctattatttgctttatgttttgtcataaaaa |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
731777 |
gttctcatgtatctcttgttccaccaggtctaaatgcattttggttacatacgagagtttcatgttttgctattatttgctttatgttttgtcataaaaa |
731876 |
T |
|
| Q |
183 |
taaatgctctttccatggatttattttgaagttaaaacttccatattgctttaattggctttgtgcatttaatgtacttcaaacttagtttaatgacacg |
282 |
Q |
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| T |
731877 |
taaatgttctttccatggatttattttgaagttaaaacttccatattgctttaattggctttgtgcatttaatgtacttcaaacttaatttaatgacacg |
731976 |
T |
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| Q |
283 |
agcttatgaatttagaaattatttgtcgccaaacat |
318 |
Q |
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| T |
731977 |
agcttatgaatttagaaattatttgtcgccaaacat |
732012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 686493 - 686437
Alignment:
| Q |
83 |
gttctcatgtatctcttgttccaccaggtctaaatgcattttggttacatacgagag |
139 |
Q |
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| T |
686493 |
gttctcatgtatctcttgttccaccaggtctaaatgcattttggttacatacgagag |
686437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 686560 - 686518
Alignment:
| Q |
16 |
ataacacggtttattttctcattagccaaagatctttgaacta |
58 |
Q |
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| T |
686560 |
ataacacggtttattttctcattagccaaagatctttgaacta |
686518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 703927 - 703885
Alignment:
| Q |
16 |
ataacacggtttattttctcattagccaaagatctttgaacta |
58 |
Q |
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| T |
703927 |
ataacacggtttattttctcattagccaaagatctttgaacta |
703885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 731715 - 731752
Alignment:
| Q |
20 |
cacggtttattttctcattagccaaagatctttgaacta |
58 |
Q |
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| T |
731715 |
cacggtttattttctcattagcc-aagatctttgaacta |
731752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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