View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15842_low_15 (Length: 268)
Name: NF15842_low_15
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 5159427 - 5159249
Alignment:
| Q |
23 |
tttacaaattatgtttgactatttaaaaaatttcaagnnnnnnn-gagtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctaga |
121 |
Q |
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| T |
5159427 |
tttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctaga |
5159328 |
T |
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| Q |
122 |
tgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
200 |
Q |
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| T |
5159327 |
tgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggcaacctatcgcgtcaaagagaaaatg |
5159249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 5181608 - 5181476
Alignment:
| Q |
69 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattga |
168 |
Q |
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| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattga |
5181509 |
T |
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| Q |
169 |
agtcggcatactatcgcgtcaaagaggaaatgg |
201 |
Q |
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| T |
5181508 |
agtcggcaacctatcgcgtcaaagaggaaatgg |
5181476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
| Q |
150 |
gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
201 |
Q |
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| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
5194831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
139 |
aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
200 |
Q |
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| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 5172374 - 5172339
Alignment:
| Q |
100 |
caaattcttggagaatcctagatgacaaattggtat |
135 |
Q |
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| T |
5172374 |
caaattcttggagaatccttgatgacaaattggtat |
5172339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
| Q |
202 |
aaagagtattatgtggagagtgacaaaacatattttttc |
240 |
Q |
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| T |
4843423 |
aaagagtattatgtggagagtggcaaaccatattttttc |
4843461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
| Q |
202 |
aaagagtattatgtggagagtgacaaaacatattt |
236 |
Q |
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| T |
5172136 |
aaagagtattatgtggagagtggcaaaacatattt |
5172102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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