View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15842_low_16 (Length: 267)
Name: NF15842_low_16
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 33022313 - 33022089
Alignment:
| Q |
22 |
agagttgaatcttttgaaaacagcgcttgaaccataccgccaacatggtaacgtgtctgtatacagacagttcgctattcaacagcaagttaaaggtcgt |
121 |
Q |
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| T |
33022313 |
agagttgaatcttttgaaaacagcgcttgaaccataccgccaacatggtaacgtgtctgtatacagacagttcgctattcaacagcaagttaaaggtcgt |
33022214 |
T |
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| Q |
122 |
ttctagcctatctgtccgaattcaatcacgaaggatcgaaaccaatttaagaccattccaaaattcccctgagcagcagaagcaatctgtatgcattgac |
221 |
Q |
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| T |
33022213 |
ttctagcctatctgtccgaattcaatcacgaaggattgaaaccaatttaagaccattccaaaattcccctgagcagcagaagcaatctgtatgcattgac |
33022114 |
T |
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| Q |
222 |
accagcaaatctcaatagacctaga |
246 |
Q |
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| T |
33022113 |
accagcaaatctcaatagacctaga |
33022089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 33028515 - 33028359
Alignment:
| Q |
90 |
agttcgctattcaacagcaagttaaaggtcgtttctagcctatctgtccgaattcaatcacgaaggatcgaaaccaatttaagaccattccaaaattccc |
189 |
Q |
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||||| |||||||||| ||| | ||||||| ||||||||||||||||| | || ||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
33028515 |
agttcactattcaacaacaaataaaaggtcatttctagcctatctgtctggatccaatcacaaaggatcgaaacaaatttaagaccattccaaaattccc |
33028416 |
T |
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| Q |
190 |
ctgagcagcagaagcaatctgtatgcattgacaccagcaaatctcaatagacctaga |
246 |
Q |
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| |||| |||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
33028415 |
cagagcgacagaagcaatctgtatgcatcgacaccagcaaatctcaacagacctaga |
33028359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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