View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15842_low_17 (Length: 259)
Name: NF15842_low_17
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 43170278 - 43170519
Alignment:
| Q |
1 |
acacaaacatgagagtagagaacaatttcaagtttaaaaacaatacaaagaacacgagcagcatttacccgtgtcatagtagatgtatcccagagctgga |
100 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43170278 |
acacaaacatgagaatagagaaaaatttcaagtttaaaaacaatacaaagaacacaagcag--tttacccgtgtcatagtagatgtatcccagagctgga |
43170375 |
T |
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| Q |
101 |
caatggaattcatgaaaccaatggcttaaatgtgtccatctggctcccagctaacacttgtgataggaccatcttccagcgttgtagggagagcaacaga |
200 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43170376 |
caatggaattcatcaaaccaatggctaaaatgtgtccatctggctgccagctaacacttgtgataggaccatcttccagcgttgtagggagagcaacaga |
43170475 |
T |
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| Q |
201 |
atcatagaaaccatcggaatcactacaaagaacaactgtatcat |
244 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43170476 |
atcatagaaaccatcggaatcactacaaagaacaactatatcat |
43170519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 43218058 - 43217825
Alignment:
| Q |
1 |
acacaaacatgagagtagagaacaatttcaagtttaaaaacaatacaaagaacacgagcagcatttacccgtgtcatagtagatgtatcccagagctgga |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43218058 |
acacaaacatgagaatagagaacaatttcaagtttaaaaacaatacaaagaacacaagcag--tttacccgtgtcatagtagatgtatcccagagctgga |
43217961 |
T |
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| Q |
101 |
caatggaattcatgaaaccaatggcttaaatgtgtccatctggctcccagctaacacttgtgataggaccatcttccagcgttgtagggagagcaacaga |
200 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43217960 |
caatggaattcatcaaaccaatggctaaaatgtgtccatctggctgccagctaacacttgtgataggaccatcttccagcgttgtagggagagcaacaga |
43217861 |
T |
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| Q |
201 |
atcatagaaaccatcggaatcactacaaagaacaac |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
43217860 |
atcatagaaaccatcggaatcactacaaagaacaac |
43217825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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